CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27320	Soybean	nucleus	86.73	87.13
GSMUA_Achr8P19930_001	Banana	cytosol	61.33	71.66
VIT_19s0014g01520.t01	Wine grape	plastid	68.42	69.7
PGSC0003DMT400032252	Potato	cytosol, peroxisome, plastid	60.87	68.03
Bra039666.1-P	Field mustard	cytosol	60.64	67.43
Solyc07g062610.2.1	Tomato	plastid	60.18	67.26
Os06t0531200-01	Rice	plastid	60.41	67.01
CDY24104	Canola	cytosol	59.95	66.67
CDY59398	Canola	plastid	61.1	62.38
Bra030947.1-P	Field mustard	plastid	60.64	61.92
CDY02515	Canola	plastid	60.64	61.92
OQU86107	Sorghum	cytosol	44.39	61.2
AT1G53280.1	Thale cress	plastid	61.33	61.19
AT3G14990.1	Thale cress	cytosol	54.69	60.97
TraesCS7D01G329500.1	Wheat	golgi, plastid	60.64	60.92
TraesCS7A01G349100.1	Wheat	plastid	60.18	60.46
CDX98521	Canola	cytosol	53.78	59.95
CDX97625	Canola	cytosol	53.78	59.95
Bra027286.1-P	Field mustard	cytosol	53.78	59.95
Zm00001d046135_P001	Maize	plastid	59.73	59.73
CDX82455	Canola	cytosol, golgi, mitochondrion	53.55	59.69
EER89866	Sorghum	plastid	60.41	59.59
Bra001577.1-P	Field mustard	cytosol, golgi, mitochondrion	53.32	59.44
CDX75800	Canola	cytosol, golgi, mitochondrion	53.09	59.18
CDX95299	Canola	cytosol	52.63	58.82
CDY23161	Canola	cytosol	51.72	57.8
Bra033480.1-P	Field mustard	cytosol	51.72	57.8
TraesCS3D01G144800.1	Wheat	mitochondrion	54.92	56.34
TraesCS3B01G162300.1	Wheat	mitochondrion	54.69	56.24
TraesCS7B01G233600.2	Wheat	mitochondrion	60.18	56.2
Zm00001d039363_P001	Maize	mitochondrion	54.46	55.61
TraesCS3A01G142800.1	Wheat	mitochondrion	53.78	55.29
Os01t0217800-01	Rice	mitochondrion	52.86	53.97
CDY25999	Canola	golgi, plastid	60.64	53.64
TraesCS1D01G007700.1	Wheat	cytosol	49.2	46.64
KRH71131	Soybean	cytosol, mitochondrion, nucleus	32.95	46.6
Os01t0217500-01	Rice	cytosol	41.42	45.82
TraesCS3D01G144900.1	Wheat	cytosol	40.96	45.43
TraesCS3A01G142700.1	Wheat	cytosol	40.96	45.2
KRH50291	Soybean	plastid	46.45	45.11
OQU86110	Sorghum	extracellular, plasma membrane	39.82	40.85
VIT_15s0024g01260.t01	Wine grape	cytosol	17.85	32.37
HORVU3Hr1G049070.10	Barley	cytosol, nucleus, plasma membrane	8.01	17.07

Protein Annotations

EMBL:ACUP02008374	EnsemblPlants:KRH21993	EnsemblPlantsGene:GLYMA_13G271200	EntrezGene:100807226	Gene3D:3.40.50.880	InterPro:Class_I_gatase-like
InterPro:DJ-1	InterPro:DJ-1/PfpI	InterPro:IPR029062	PANTHER:PTHR43444	PANTHER:PTHR43444:SF8	PFAM:PF01965
ProteinID:KRH21993	ProteinID:KRH21993.1	SEG:seg	SUPFAM:SSF52317	TIGRFAMs:TIGR01383	UniParc:UPI00023CFC80
UniProt:I1M322	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:37329145..37332717

Molecular Weight (calculated)

46781.9 Da

IEP (calculated)

6.947

GRAVY (calculated)

0.168

Length

437 amino acids

Sequence
(BLAST)

001: MALRHLRIFP HTLPLTLTPK PKLNNSNRFS FFTSSLSLSS TTLMATAHKV LVPIADGTEP MEAVIIIDVL RRSGADVTVA SSSANLAVQA LHGVKIIADA
101: SVSDVAATAF DLVALPGGLQ GDENLRDCKV LEGFVKKHVE DGRLYAAVCA APAVVLGPWG LLNGKKATCY PALMEKLAAY VAATSESRVQ VDGTVVTSRA
201: PGTTMEFAIA LIEQLIGKEK AYEVAGPLVM RSNHDDEHTF KEFNSVQWTS DNPPKILVPI ANGSEEMEAV IIIDILRRAK AKVVVASVED KLEIVASRKV
301: KLEADMLLDE ATKLSYDLIV LPGGLGGAQT FANSETLVSL LKKQRESNKY YGAICASPAL VLEPHGLLKG KKATAFPVMC DKLSDQSEVE NRVVVDGNLI
401: TSRGPGTSIE FALAIVEKLF GRKLALELAN AVVFARP

Best Arabidopsis Sequence Match ( AT1G53280.1 )
(BLAST)

001: MASSSLCHRY FNKITVTPFF NTKKLHHYSP RRISLRVNRR SFSISATMSS STKKVLIPVA HGTEPFEAVV MIDVLRRGGA DVTVASVENQ VGVDACHGIK
101: MVADTLLSDI TDSVFDLIML PGGLPGGETL KNCKPLEKMV KKQDTDGRLN AAICCAPALA FGTWGLLEGK KATCYPVFME KLAACATAVE SRVEIDGKIV
201: TSRGPGTTME FSVTLVEQLL GKEKAVEVSG PLVMRPNPGD EYTITELNQV SWSFEGTPQI LVPIADGSEE MEAVAIIDVL KRAKANVVVA ALGNSLEVVA
301: SRKVKLVADV LLDEAEKNSY DLIVLPGGLG GAEAFASSEK LVNMLKKQAE SNKPYGAICA SPALVFEPHG LLKGKKATAF PAMCSKLTDQ SHIEHRVLVD
401: GNLITSRGPG TSLEFALAIV EKFYGREKGL QLSKATLV

Arabidopsis Description

DJ1BProtein DJ-1 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.