Factsheet for TraesCS3B01G162300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221900.1
TraesCS1B01G235100.2
TraesCS1D01G223600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53280.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT1G53280.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT1G53280.1	TraesCS1D01G223600.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G144800.1	Wheat	mitochondrion	98.82	98.59
TraesCS3A01G142800.1	Wheat	mitochondrion	97.18	97.18
OQU86107	Sorghum	cytosol	65.88	88.33
Zm00001d039363_P001	Maize	mitochondrion	84.71	84.11
Os01t0217800-01	Rice	mitochondrion	82.82	82.24
HORVU3Hr1G027610.6	Barley	cytosol, mitochondrion, plastid	75.06	69.35
GSMUA_Achr8P19930_001	Banana	cytosol	56.24	63.9
PGSC0003DMT400032252	Potato	cytosol, peroxisome, plastid	54.35	59.08
Solyc07g062610.2.1	Tomato	plastid	53.88	58.57
Bra039666.1-P	Field mustard	cytosol	53.65	58.02
CDY24104	Canola	cytosol	53.41	57.76
VIT_19s0014g01520.t01	Wine grape	plastid	56.0	55.48
CDX95299	Canola	cytosol	50.82	55.24
CDY59398	Canola	plastid	55.29	54.91
KRH27320	Soybean	nucleus	56.0	54.71
KRH21993	Soybean	endoplasmic reticulum, nucleus	56.24	54.69
CDY02515	Canola	plastid	55.06	54.67
Bra030947.1-P	Field mustard	plastid	55.06	54.67
AT3G14990.1	Thale cress	cytosol	50.35	54.59
CDX97625	Canola	cytosol	50.35	54.59
Bra027286.1-P	Field mustard	cytosol	50.35	54.59
CDX98521	Canola	cytosol	50.12	54.34
Bra033480.1-P	Field mustard	cytosol	49.88	54.22
CDX75800	Canola	cytosol, golgi, mitochondrion	49.88	54.08
Bra001577.1-P	Field mustard	cytosol, golgi, mitochondrion	49.88	54.08
CDX82455	Canola	cytosol, golgi, mitochondrion	49.88	54.08
CDY23161	Canola	cytosol	49.65	53.96
AT1G53280.1	Thale cress	plastid	54.35	52.74
TraesCS7B01G233600.2	Wheat	mitochondrion	55.53	50.43
CDY25999	Canola	golgi, plastid	54.12	46.56
TraesCS7B01G246500.1	Wheat	plastid	41.18	39.15
VIT_15s0024g01260.t01	Wine grape	cytosol	17.65	31.12

Protein Annotations

EnsemblPlants:TraesCS3B01G162300.1	EnsemblPlantsGene:TraesCS3B01G162300	Gene3D:3.40.50.880	InterPro:Class_I_gatase-like	InterPro:DJ-1	InterPro:DJ-1/PfpI
InterPro:IPR029062	PANTHER:PTHR43444	PANTHER:PTHR43444:SF9	PFAM:PF01965	SEG:seg	SUPFAM:SSF52317
TIGR:cd03135	TIGRFAMs:TIGR01383	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3B:-:159568041..159571346

Molecular Weight (calculated)

45148.0 Da

IEP (calculated)

6.630

GRAVY (calculated)

0.161

Length

425 amino acids

Sequence
(BLAST)

001: MAAAASSLAR RAVSCRRLLL SRAFAAAARP AKRVLVPVAA GTEPVEAAAT ADVLNRAGAR VTVATVASAP AGDEGLLVEA AYGVKLVADA RVADLEGEDF
101: DLIALPGGMP GSTNLRECKV LERMVKMHAE KGELYGAICA APAVTLAHWG MLKGLKATCY PSFMEKFTAE VIPVNSRVVV DRNVVTSQGP GTAIEFALAL
201: VEQLYDKEKM EEVAGPLYVR PQHGAEYTIE ELNSVEWKCS GTPQVLVPVA NGSEEIEALN LIDVLRRAGA NVTVASVEDT LQIVTRRHKF NLIADMMLDE
301: AAKMEFDLIV MPGGLSGAQK FASTNKLVDL LKKQAGSGKP YGAICASPAH VLEPHGLLKG KKATAFPPMA HLLTDQSLCE NRVVIDGNLI TSRAPGTATE
401: FALAIVEKLF GREKAVSIAK EFVFM

Best Arabidopsis Sequence Match ( AT1G53280.1 )
(BLAST)

001: MASSSLCHRY FNKITVTPFF NTKKLHHYSP RRISLRVNRR SFSISATMSS STKKVLIPVA HGTEPFEAVV MIDVLRRGGA DVTVASVENQ VGVDACHGIK
101: MVADTLLSDI TDSVFDLIML PGGLPGGETL KNCKPLEKMV KKQDTDGRLN AAICCAPALA FGTWGLLEGK KATCYPVFME KLAACATAVE SRVEIDGKIV
201: TSRGPGTTME FSVTLVEQLL GKEKAVEVSG PLVMRPNPGD EYTITELNQV SWSFEGTPQI LVPIADGSEE MEAVAIIDVL KRAKANVVVA ALGNSLEVVA
301: SRKVKLVADV LLDEAEKNSY DLIVLPGGLG GAEAFASSEK LVNMLKKQAE SNKPYGAICA SPALVFEPHG LLKGKKATAF PAMCSKLTDQ SHIEHRVLVD
401: GNLITSRGPG TSLEFALAIV EKFYGREKGL QLSKATLV

Arabidopsis Description

DJ1BProtein DJ-1 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.