CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53280.1	CDX70151	AT5G05410.1	18552202
AT1G53280.1	CDX98843	AT5G05410.1	18552202
AT1G53280.1	CDY04950	AT5G05410.1	18552202
AT1G53280.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030947.1-P	Field mustard	plastid	100.0	100.0
CDY24104	Canola	cytosol	84.58	92.11
CDY59398	Canola	plastid	89.95	89.95
AT1G53280.1	Thale cress	plastid	85.28	83.33
CDX98521	Canola	cytosol	72.43	79.08
CDX97625	Canola	cytosol	71.73	78.32
CDX95299	Canola	cytosol	71.5	78.26
CDY23161	Canola	cytosol	70.56	77.24
CDX75800	Canola	cytosol, golgi, mitochondrion	70.09	76.53
CDX82455	Canola	cytosol, golgi, mitochondrion	70.09	76.53
CDY25999	Canola	golgi, plastid	85.51	74.09
GSMUA_Achr8P19930_001	Banana	cytosol	60.75	69.52
PGSC0003DMT400032252	Potato	cytosol, peroxisome, plastid	61.92	67.77
Solyc07g062610.2.1	Tomato	plastid	60.98	66.75
Os06t0531200-01	Rice	plastid	59.58	64.72
KRH27320	Soybean	nucleus	62.62	61.61
KRH21993	Soybean	endoplasmic reticulum, nucleus	61.92	60.64
OQU86107	Sorghum	cytosol	43.69	58.99
EER89866	Sorghum	plastid	60.98	58.92
TraesCS7D01G329500.1	Wheat	golgi, plastid	59.35	58.39
TraesCS7A01G349100.1	Wheat	plastid	59.11	58.16
Zm00001d046135_P001	Maize	plastid	58.18	56.98
TraesCS3B01G162300.1	Wheat	mitochondrion	54.67	55.06
TraesCS3D01G144800.1	Wheat	mitochondrion	54.44	54.69
TraesCS3A01G142800.1	Wheat	mitochondrion	53.27	53.65
Zm00001d039363_P001	Maize	mitochondrion	53.5	53.5
TraesCS7B01G233600.2	Wheat	mitochondrion	58.41	53.42
Os01t0217800-01	Rice	mitochondrion	52.57	52.57
TraesCS1D01G007700.1	Wheat	cytosol	50.47	46.85
Os01t0217500-01	Rice	cytosol	41.12	44.56
TraesCS3D01G144900.1	Wheat	cytosol	39.95	43.4
TraesCS3A01G142700.1	Wheat	cytosol	39.49	42.68
OQU86110	Sorghum	extracellular, plasma membrane	38.32	38.5
CDY49268	Canola	plastid	26.64	36.54
CDY68228	Canola	plastid	38.78	36.09
CDX69022	Canola	plastid	38.78	36.09
VIT_15s0024g01260.t01	Wine grape	cytosol	18.69	33.2
HORVU3Hr1G049070.10	Barley	cytosol, nucleus, plasma membrane	8.18	17.07

Protein Annotations

EnsemblPlants:CDY02515	EnsemblPlantsGene:GSBRNA2T00114176001	Gene3D:3.40.50.880	InterPro:Class_I_gatase-like	InterPro:DJ-1	InterPro:DJ-1/PfpI
InterPro:IPR029062	PANTHER:PTHR43444	PANTHER:PTHR43444:SF8	PFAM:PF01965	ProteinID:CDY02515	ProteinID:CDY02515.1
SEG:seg	SUPFAM:SSF52317	TIGRFAMs:TIGR01383	UniParc:UPI0002545803	MapMan:35.1	:

Description

BnaA08g01220D

Coordinates

chrLK031935:+:649707..652035

Molecular Weight (calculated)

45698.4 Da

IEP (calculated)

6.853

GRAVY (calculated)

0.085

Length

428 amino acids

Sequence
(BLAST)

001: MAFHCLNPIT ATPFSSTRLH RSTWRRTSRS FSVSATMASP AKRVLIPVAH GTEPFEAVAM IDVLRRGGAD VTVASVENQV GVDACHGIKI VADALLSDVN
101: DSVFDLIMLP GGLPGGETLK NCKPLENMVK KQDSEGRLNA AICCAPALAL GTWGLLEGRR ATCYPVFMEK LGATCGTAVE SRVEVDGRIV TSRGPGTTME
201: FSVTLVEQLF GKEKAAEVSA PLVMRPNPGD EYTITELNQM NWSFDSTPQI LVPIADGSEE MEAVAIIDFL RRAKANVVVA ALGNSLEVVA SRKVKLVADV
301: LLDEAVKNSY DLIVLPGGLG GAEAFASSEK LVNMLKKQAE SSKPYGAICA SPALVFEPHG LLKGKKATAF PAMCNKLSDQ SHIEHRVLVD GNLITSRGPG
401: TSLEFALTIV EKFYGREKGL QLAKATLV

Best Arabidopsis Sequence Match ( AT1G53280.1 )
(BLAST)

001: MASSSLCHRY FNKITVTPFF NTKKLHHYSP RRISLRVNRR SFSISATMSS STKKVLIPVA HGTEPFEAVV MIDVLRRGGA DVTVASVENQ VGVDACHGIK
101: MVADTLLSDI TDSVFDLIML PGGLPGGETL KNCKPLEKMV KKQDTDGRLN AAICCAPALA FGTWGLLEGK KATCYPVFME KLAACATAVE SRVEIDGKIV
201: TSRGPGTTME FSVTLVEQLL GKEKAVEVSG PLVMRPNPGD EYTITELNQV SWSFEGTPQI LVPIADGSEE MEAVAIIDVL KRAKANVVVA ALGNSLEVVA
301: SRKVKLVADV LLDEAEKNSY DLIVLPGGLG GAEAFASSEK LVNMLKKQAE SNKPYGAICA SPALVFEPHG LLKGKKATAF PAMCSKLTDQ SHIEHRVLVD
401: GNLITSRGPG TSLEFALAIV EKFYGREKGL QLSKATLV

Arabidopsis Description

DJ1BProtein DJ-1 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.