Factsheet for Zm00001d039363_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010048_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53280.1	Zm00001d010048_P004	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU86107	Sorghum	cytosol	70.33	94.95
TraesCS3B01G162300.1	Wheat	mitochondrion	84.11	84.71
TraesCS3D01G144800.1	Wheat	mitochondrion	84.11	84.51
TraesCS3A01G142800.1	Wheat	mitochondrion	83.18	83.76
Os01t0217800-01	Rice	mitochondrion	80.14	80.14
GSMUA_Achr8P19930_001	Banana	cytosol	56.54	64.71
HORVU3Hr1G027610.6	Barley	cytosol, mitochondrion, plastid	66.12	61.52
HORVU1Hr1G001090.1	Barley	cytosol	65.89	59.62
TraesCS1D01G007700.1	Wheat	cytosol	64.02	59.44
Bra039666.1-P	Field mustard	cytosol	53.04	57.76
PGSC0003DMT400032252	Potato	cytosol, peroxisome, plastid	52.57	57.54
CDY24104	Canola	cytosol	52.8	57.51
Solyc07g062610.2.1	Tomato	plastid	52.34	57.29
VIT_19s0014g01520.t01	Wine grape	plastid	55.37	55.24
KRH27320	Soybean	nucleus	55.61	54.71
CDX95299	Canola	cytosol	49.77	54.48
KRH21993	Soybean	endoplasmic reticulum, nucleus	55.61	54.46
CDY59398	Canola	plastid	54.44	54.44
AT3G14990.1	Thale cress	cytosol	49.77	54.34
CDX97625	Canola	cytosol	49.53	54.08
CDX82455	Canola	cytosol, golgi, mitochondrion	49.53	54.08
Bra027286.1-P	Field mustard	cytosol	49.53	54.08
Bra001577.1-P	Field mustard	cytosol, golgi, mitochondrion	49.53	54.08
CDX98521	Canola	cytosol	49.3	53.83
CDX75800	Canola	cytosol, golgi, mitochondrion	49.3	53.83
Zm00001d046135_P001	Maize	plastid	54.91	53.78
CDY02515	Canola	plastid	53.5	53.5
Bra030947.1-P	Field mustard	plastid	53.5	53.5
Bra033480.1-P	Field mustard	cytosol	48.83	53.45
CDY23161	Canola	cytosol	48.6	53.2
AT1G53280.1	Thale cress	plastid	53.74	52.51
CDY25999	Canola	golgi, plastid	53.97	46.76
VIT_15s0024g01260.t01	Wine grape	cytosol	16.82	29.88
Zm00001d031784_P003	Maize	plastid	39.25	28.87

Protein Annotations

EMBL:EU969042	EnsemblPlants:Zm00001d039363_P001	EnsemblPlants:Zm00001d039363_T001	EnsemblPlantsGene:Zm00001d039363	EntrezGene:100284612	Gene3D:3.40.50.880
InterPro:Class_I_gatase-like	InterPro:DJ-1	InterPro:DJ-1/PfpI	InterPro:IPR029062	PANTHER:PTHR43444	PANTHER:PTHR43444:SF9
PFAM:PF01965	ProteinID:ONM28457.1	SEG:seg	SUPFAM:SSF52317	TIGRFAMs:TIGR01383	UniParc:UPI000182E4E7
UniProt:B6TVM7	MapMan:35.1	:	:	:	:

Description

Protein DJ-1 homolog B

Coordinates

chr3:-:2609206..2612957

Molecular Weight (calculated)

45144.9 Da

IEP (calculated)

6.870

GRAVY (calculated)

0.109

Length

428 amino acids

Sequence
(BLAST)

001: MAAAAASSVA RRAASRGGQF IARAFASGVG GGGEKAKRVL VPVAAGTEPI EAATTADVLN RAGARVTVAT ADPPGDDGLL VQAAYGVKLV ADGRVADLQG
101: EPFDLIALPG GMPGSVGLRD CKALEKMVKT HAEDGGLYGA ICAAPAVTLA YWGMLKGLKA TCYPSFMEKF TAEVIPVDSR VVVDRNAITS QGPGTAVEFA
201: LALVEKLYGK EKMEEVAGPL YLRPQHGVEY TIEELNSVEW KCGSTPQVLV PVANGSEEIE AVNLIDVLRR AGANVIVASV EEKLQIVTRR HKFNLIADMM
301: LDEAIKMQFD LIVMPGGLQG AQKFASTKQL VDLLKKQAES NKPYGAICAS PAHVLEPHGL LKGKKATAFP PMSHLLTDQS ACEHRVVVDG NLITSRAPGT
401: ATEFGLAIVE KLFGRDKAVS IAKELIFM

Best Arabidopsis Sequence Match ( AT1G53280.1 )
(BLAST)

001: MASSSLCHRY FNKITVTPFF NTKKLHHYSP RRISLRVNRR SFSISATMSS STKKVLIPVA HGTEPFEAVV MIDVLRRGGA DVTVASVENQ VGVDACHGIK
101: MVADTLLSDI TDSVFDLIML PGGLPGGETL KNCKPLEKMV KKQDTDGRLN AAICCAPALA FGTWGLLEGK KATCYPVFME KLAACATAVE SRVEIDGKIV
201: TSRGPGTTME FSVTLVEQLL GKEKAVEVSG PLVMRPNPGD EYTITELNQV SWSFEGTPQI LVPIADGSEE MEAVAIIDVL KRAKANVVVA ALGNSLEVVA
301: SRKVKLVADV LLDEAEKNSY DLIVLPGGLG GAEAFASSEK LVNMLKKQAE SNKPYGAICA SPALVFEPHG LLKGKKATAF PAMCSKLTDQ SHIEHRVLVD
401: GNLITSRGPG TSLEFALAIV EKFYGREKGL QLSKATLV

Arabidopsis Description

DJ1BProtein DJ-1 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.