CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 4
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53280.1	CDX70151	AT5G05410.1	18552202
AT1G53280.1	CDX98843	AT5G05410.1	18552202
AT1G53280.1	CDY04950	AT5G05410.1	18552202
AT1G53280.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24104	Canola	cytosol	76.32	95.93
CDY59398	Canola	plastid	75.51	87.15
CDY02515	Canola	plastid	74.09	85.51
AT1G53280.1	Thale cress	plastid	75.51	85.16
CDX98521	Canola	cytosol	63.16	79.59
CDX95299	Canola	cytosol	62.96	79.54
CDX97625	Canola	cytosol	62.96	79.34
CDX75800	Canola	cytosol, golgi, mitochondrion	62.15	78.32
CDY23161	Canola	cytosol	61.94	78.26
CDX82455	Canola	cytosol, golgi, mitochondrion	61.74	77.81
GSMUA_Achr8P19930_001	Banana	cytosol	51.21	67.65
PGSC0003DMT400032252	Potato	cytosol, peroxisome, plastid	53.04	67.01
Solyc07g062610.2.1	Tomato	plastid	52.43	66.24
Os06t0531200-01	Rice	plastid	51.01	63.96
KRH21993	Soybean	endoplasmic reticulum, nucleus	53.64	60.64
KRH27320	Soybean	nucleus	53.04	60.23
OQU86107	Sorghum	cytosol	37.85	58.99
EER89866	Sorghum	plastid	52.63	58.69
Zm00001d046135_P001	Maize	plastid	51.82	58.58
TraesCS7D01G329500.1	Wheat	golgi, plastid	51.21	58.16
TraesCS7A01G349100.1	Wheat	plastid	51.01	57.93
TraesCS3B01G162300.1	Wheat	mitochondrion	46.56	54.12
Zm00001d039363_P001	Maize	mitochondrion	46.76	53.97
TraesCS3D01G144800.1	Wheat	mitochondrion	46.36	53.76
TraesCS7B01G233600.2	Wheat	mitochondrion	50.81	53.63
TraesCS3A01G142800.1	Wheat	mitochondrion	45.55	52.94
Os01t0217800-01	Rice	mitochondrion	45.55	52.57
TraesCS1D01G007700.1	Wheat	cytosol	43.52	46.64
Os01t0217500-01	Rice	cytosol	35.63	44.56
TraesCS3D01G144900.1	Wheat	cytosol	34.41	43.15
TraesCS3A01G142700.1	Wheat	cytosol	34.01	42.42
CDY49268	Canola	plastid	24.7	39.1
CDX69022	Canola	plastid	36.23	38.91
OQU86110	Sorghum	extracellular, plasma membrane	33.4	38.73
CDY68228	Canola	plastid	35.83	38.48
VIT_15s0024g01260.t01	Wine grape	cytosol	15.59	31.95
HORVU3Hr1G049070.10	Barley	cytosol, nucleus, plasma membrane	7.09	17.07

Protein Annotations

EnsemblPlants:CDY25999	EnsemblPlantsGene:GSBRNA2T00033530001	Gene3D:3.40.50.880	InterPro:Class_I_gatase-like	InterPro:DJ-1	InterPro:DJ-1/PfpI
InterPro:IPR029062	PANTHER:PTHR43444	PANTHER:PTHR43444:SF8	PFAM:PF01965	ProteinID:CDY25999	ProteinID:CDY25999.1
SUPFAM:SSF52317	TIGRFAMs:TIGR01383	UniParc:UPI0004EEC9B6	UniProt:A0A078GL72	MapMan:35.1	:

Description

BnaC06g06250DBnaC06g06250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GL72]

Coordinates

chrLK032184:+:34128..37521

Molecular Weight (calculated)

53525.4 Da

IEP (calculated)

9.486

GRAVY (calculated)

0.064

Length

494 amino acids

Sequence
(BLAST)

001: MSLIKILTII FFFSFRKHRK TTTTALIKLR TGTLFSLLNN KLHAVFDQPK QTFSLALAHS RHVFTRQWRR RRVTATLVSL HFSSPRRTSL LVNRRSFSVS
101: ATMASHSKKV LIPVAHGTEP FEAVVMIDVL RRGGADVTVA SVENQVGVDA CHGIKMVADT LLSDITDSVF DLIMLPGGLP GGETLKNCKA LENMVKKQDA
201: DGRLNAAICC APALALGTWG LLEGKKATCY PVFMEKLGAT CATAVESRVE IDGRIVTSRG PGTTMEFSVA LVEQLFGKEK AAEVSAPLVM RPNPGDEYTI
301: TELNQIKWSY ENTPQILVPI ADGSEEMEAV AIIDVLRRAK ANVVVAALGN SLEVVASRKV KLVADVLLNE AEKNSYDLIV LPGGLGGAEA FASSEKLVNM
401: LKKQAESNKP YGAVCASPAL VFEPHGLLKG KKATAYPPMC NKLSDQSHIE HRVLVDGNLI TSRGPGTSLE CALAIVEKFY GREKGLQLSK ATLV

Best Arabidopsis Sequence Match ( AT1G53280.1 )
(BLAST)

001: MASSSLCHRY FNKITVTPFF NTKKLHHYSP RRISLRVNRR SFSISATMSS STKKVLIPVA HGTEPFEAVV MIDVLRRGGA DVTVASVENQ VGVDACHGIK
101: MVADTLLSDI TDSVFDLIML PGGLPGGETL KNCKPLEKMV KKQDTDGRLN AAICCAPALA FGTWGLLEGK KATCYPVFME KLAACATAVE SRVEIDGKIV
201: TSRGPGTTME FSVTLVEQLL GKEKAVEVSG PLVMRPNPGD EYTITELNQV SWSFEGTPQI LVPIADGSEE MEAVAIIDVL KRAKANVVVA ALGNSLEVVA
301: SRKVKLVADV LLDEAEKNSY DLIVLPGGLG GAEAFASSEK LVNMLKKQAE SNKPYGAICA SPALVFEPHG LLKGKKATAF PAMCSKLTDQ SHIEHRVLVD
401: GNLITSRGPG TSLEFALAIV EKFYGREKGL QLSKATLV

Arabidopsis Description

DJ1BProtein DJ-1 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.