Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06088 | Canola | nucleus | 96.34 | 97.41 |
| Bra007341.1-P | Field mustard | nucleus | 95.97 | 97.04 |
| CDY33815 | Canola | nucleus | 35.9 | 85.22 |
| CDX88955 | Canola | nucleus | 80.95 | 85.0 |
| Solyc10g080310.1.1 | Tomato | nucleus | 22.71 | 84.93 |
| CDY52095 | Canola | nucleus | 80.95 | 83.08 |
| AT3G57600.1 | Thale cress | nucleus | 76.56 | 75.45 |
| CDY33814 | Canola | nucleus | 20.88 | 65.52 |
| KRG95297 | Soybean | nucleus | 60.81 | 58.87 |
| Zm00001d043409_P001 | Maize | nucleus | 26.01 | 56.8 |
| VIT_08s0007g08150.t01 | Wine grape | nucleus | 58.61 | 55.75 |
| KRH66977 | Soybean | nucleus | 57.88 | 55.63 |
| KRH16554 | Soybean | nucleus | 52.38 | 55.21 |
| KRG93713 | Soybean | nucleus | 54.21 | 54.21 |
| KRG93709 | Soybean | nucleus | 47.25 | 53.75 |
| KRH71963 | Soybean | nucleus | 56.78 | 50.16 |
| KRH33104 | Soybean | nucleus | 56.04 | 47.96 |
| PGSC0003DMT400060970 | Potato | nucleus | 50.18 | 43.77 |
| GSMUA_Achr3P29800_001 | Banana | mitochondrion | 25.27 | 36.7 |
| KXG40072 | Sorghum | nucleus | 41.76 | 36.08 |
| Zm00001d048296_P001 | Maize | nucleus | 40.29 | 35.83 |
| Os03t0174400-00 | Rice | nucleus | 41.39 | 35.53 |
| TraesCS4B01G290100.1 | Wheat | nucleus | 40.29 | 34.92 |
| Zm00001d027870_P001 | Maize | nucleus | 41.03 | 34.89 |
| TraesCS4D01G289200.1 | Wheat | nucleus | 40.66 | 34.8 |
| TraesCS4A01G013600.1 | Wheat | nucleus | 40.66 | 34.69 |
| Zm00001d048297_P001 | Maize | nucleus | 39.93 | 33.85 |
| CDY39036 | Canola | nucleus | 23.44 | 32.32 |
| CDY20377 | Canola | nucleus | 22.71 | 31.31 |
| CDX68128 | Canola | nucleus | 23.08 | 30.88 |
| CDY70626 | Canola | nucleus | 23.08 | 30.88 |
| GSMUA_Achr7P27150_001 | Banana | nucleus | 28.94 | 30.38 |
| CDY64211 | Canola | nucleus, plastid | 22.71 | 30.1 |
| CDY47519 | Canola | nucleus | 22.71 | 30.1 |
| CDX93190 | Canola | nucleus | 22.34 | 28.64 |
| CDX70820 | Canola | nucleus | 26.37 | 25.71 |
| CDY71905 | Canola | nucleus | 22.71 | 25.41 |
| CDY58117 | Canola | nucleus | 26.37 | 24.91 |
| CDY02629 | Canola | nucleus | 26.01 | 24.65 |
| CDY36289 | Canola | nucleus | 26.01 | 24.4 |
| CDY54455 | Canola | nucleus | 21.61 | 23.89 |
| CDY67039 | Canola | nucleus | 25.27 | 23.63 |
| CDX92610 | Canola | nucleus | 26.37 | 23.53 |
| CDY08557 | Canola | nucleus | 26.01 | 22.61 |
| CDY52149 | Canola | nucleus | 27.11 | 22.56 |
| CDY04950 | Canola | nucleus | 26.74 | 22.53 |
| CDY00987 | Canola | nucleus | 25.64 | 22.51 |
| CDY25420 | Canola | nucleus | 26.37 | 21.95 |
| CDX98843 | Canola | nucleus | 26.74 | 21.86 |
| CDX70151 | Canola | nucleus | 25.64 | 21.21 |
| CDY52427 | Canola | nucleus | 24.54 | 20.74 |
| CDY61527 | Canola | nucleus | 21.98 | 20.41 |
| CDY52924 | Canola | nucleus | 24.18 | 19.64 |
| CDX73896 | Canola | nucleus | 27.11 | 19.37 |
| CDY07614 | Canola | nucleus | 23.81 | 19.35 |
| CDY54991 | Canola | nucleus | 23.81 | 19.29 |
| CDY00719 | Canola | nucleus | 6.59 | 7.59 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | GO:A0A078C528 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX72012 |
| ProteinID:CDX72012 | ProteinID:CDX72012.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00155789001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31241 | PANTHER:PTHR31241:SF3 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EB3D2E | SEG:seg | : | : | : | : |
Description
BnaC08g28620D
Coordinates
chrLK031795:-:1818996..1819817
Molecular Weight (calculated)
30831.1 Da
IEP (calculated)
5.278
GRAVY (calculated)
-0.848
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKPSSMKQW KKGPARGKGG PQNALCRYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA EEAAMAYDEA ALKLYGPEAY LNLPHLQQRK QQGPPLNNTQ
101: RFKWVPSKKF ISMFPSRGLL NVNAQPSVQV IQQRLDELKR NGLLSQSYSS SSSSTESKSL LDDKNSKGEP DKVLEGDGDK EKPEIDLNEF LQQMGILKDK
201: SQAEASQVVE SHPTLPWNEQ EEGGSPFTAQ SLSWETMIEM PGSETSAMQF DYDFEDDDLG FSSIWNFCGS LDE
101: RFKWVPSKKF ISMFPSRGLL NVNAQPSVQV IQQRLDELKR NGLLSQSYSS SSSSTESKSL LDDKNSKGEP DKVLEGDGDK EKPEIDLNEF LQQMGILKDK
201: SQAEASQVVE SHPTLPWNEQ EEGGSPFTAQ SLSWETMIEM PGSETSAMQF DYDFEDDDLG FSSIWNFCGS LDE
001: MEKSSSMKQW KKGPARGKGG PQNALCQYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA EEAAMAYDEA ALKLYGHDAY LNLPHLQRNT RPSLSNSQRF
101: KWVPSRKFIS MFPSCGMLNV NAQPSVHIIQ QRLEELKKTG LLSQSYSSSS SSTESKTNTS FLDEKTSKGE TDNMFEGGDQ KKPEIDLTEF LQQLGILKDE
201: NEAEPSEVAE CHSPPPWNEQ EETGSPFRTE NFSWDTLIEM PRSETTTMQF DSSNFGSYDF EDDVSFPSIW DYYGSLD
101: KWVPSRKFIS MFPSCGMLNV NAQPSVHIIQ QRLEELKKTG LLSQSYSSSS SSTESKTNTS FLDEKTSKGE TDNMFEGGDQ KKPEIDLTEF LQQLGILKDE
201: NEAEPSEVAE CHSPPPWNEQ EETGSPFRTE NFSWDTLIEM PRSETTTMQF DSSNFGSYDF EDDVSFPSIW DYYGSLD
Arabidopsis Description
DREB2FDehydration-responsive element-binding protein 2F [Source:UniProtKB/Swiss-Prot;Acc:Q9SVX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.