Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034159.1-P | Field mustard | nucleus | 94.85 | 95.17 |
| CDY67039 | Canola | nucleus | 89.35 | 89.04 |
| CDY00987 | Canola | nucleus | 70.45 | 65.92 |
| CDY08557 | Canola | nucleus | 70.1 | 64.97 |
| AT3G11020.1 | Thale cress | nucleus | 67.7 | 59.7 |
| CDX73896 | Canola | nucleus | 69.07 | 52.62 |
| CDY04950 | Canola | nucleus | 56.36 | 50.62 |
| CDX70151 | Canola | nucleus | 57.04 | 50.3 |
| CDY52149 | Canola | nucleus | 55.67 | 49.39 |
| CDX98843 | Canola | nucleus | 56.01 | 48.8 |
| CDY33815 | Canola | nucleus | 17.87 | 45.22 |
| CDY00719 | Canola | nucleus | 30.93 | 37.97 |
| CDX93190 | Canola | nucleus | 24.74 | 33.8 |
| HORVU6Hr1G050500.2 | Barley | nucleus | 32.99 | 32.0 |
| CDY71905 | Canola | nucleus | 26.8 | 31.97 |
| HORVU6Hr1G050520.2 | Barley | nucleus | 25.77 | 31.65 |
| CDY54455 | Canola | nucleus | 26.46 | 31.17 |
| CDY47519 | Canola | nucleus | 21.99 | 31.07 |
| CDY64211 | Canola | nucleus, plastid | 21.65 | 30.58 |
| CDY70626 | Canola | nucleus | 20.96 | 29.9 |
| CDX68128 | Canola | nucleus | 20.96 | 29.9 |
| CDY39036 | Canola | nucleus | 20.27 | 29.8 |
| CDY52924 | Canola | nucleus | 34.36 | 29.76 |
| CDY20377 | Canola | nucleus | 19.93 | 29.29 |
| KXG21735 | Sorghum | nucleus | 32.65 | 28.27 |
| CDY61527 | Canola | nucleus | 27.49 | 27.21 |
| TraesCS1D01G223600.2 | Wheat | nucleus | 36.43 | 27.11 |
| TraesCS1B01G235100.2 | Wheat | nucleus | 36.08 | 27.06 |
| Zm00001d010048_P004 | Maize | nucleus | 33.33 | 26.43 |
| CDY06088 | Canola | nucleus | 24.4 | 26.3 |
| CDX72012 | Canola | nucleus | 24.4 | 26.01 |
| TraesCS1A01G221900.1 | Wheat | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 36.08 | 25.8 |
| CDX70820 | Canola | nucleus | 24.05 | 25.0 |
| CDX88955 | Canola | nucleus | 21.65 | 24.23 |
| CDY58117 | Canola | nucleus | 24.05 | 24.22 |
| CDY52095 | Canola | nucleus | 21.99 | 24.06 |
| CDY02629 | Canola | nucleus | 23.71 | 23.96 |
| HORVU1Hr1G060490.5 | Barley | plasma membrane | 37.11 | 23.89 |
| CDX92610 | Canola | nucleus | 24.4 | 23.2 |
| CDY25420 | Canola | nucleus | 24.05 | 21.34 |
| CDY54991 | Canola | nucleus | 20.96 | 18.1 |
| CDY52427 | Canola | nucleus | 19.59 | 17.65 |
| CDY07614 | Canola | nucleus | 19.24 | 16.67 |
| CDY33814 | Canola | nucleus | 3.44 | 11.49 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | GO:A0A078HFU8 | UniProt:A0A078HFU8 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY36289 | ProteinID:CDY36289 | ProteinID:CDY36289.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00060260001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31241 | PANTHER:PTHR31241:SF2 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EF45DA | SEG:seg | : | : | : | : |
Description
BnaA01g31290DBnaA01g31290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFU8]
Coordinates
chrLK032372:+:154423..155548
Molecular Weight (calculated)
32330.6 Da
IEP (calculated)
4.723
GRAVY (calculated)
-0.708
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIYEQTGIN TSSKKRKSRA RADGTTVADR LKKWKEYNVI ADASSTKKRK VPAKGSKKGC MKGKGGPENT HCSFRGVRQR VWGKWVAEIR EPNRVSRLWL
101: GTFPTAEEAA SAYDEAAKVM YGPLARLNFP QQCVVASEFL ASTSSQSEVC SSVEHKPVLG GDAGSESRQV SQIRDNNIRM SSDLLDEFDG EYWGRVSKEI
201: EKPKEGEEEV LTVADYGWSN DMLNEQDLWD PNEVFDVDEL LGDIDECIML TGTGVDGDQN GINPGGYDSH IPLQLEPHDG HEFFDLSSQD L
101: GTFPTAEEAA SAYDEAAKVM YGPLARLNFP QQCVVASEFL ASTSSQSEVC SSVEHKPVLG GDAGSESRQV SQIRDNNIRM SSDLLDEFDG EYWGRVSKEI
201: EKPKEGEEEV LTVADYGWSN DMLNEQDLWD PNEVFDVDEL LGDIDECIML TGTGVDGDQN GINPGGYDSH IPLQLEPHDG HEFFDLSSQD L
001: MAVYEQTGTE QPKKRKSRAR AGGLTVADRL KKWKEYNEIV EASAVKEGEK PKRKVPAKGS KKGCMKGKGG PDNSHCSFRG VRQRIWGKWV AEIREPKIGT
101: RLWLGTFPTA EKAASAYDEA ATAMYGSLAR LNFPQSVGSE FTSTSSQSEV CTVENKAVVC GDVCVKHEDT DCESNPFSQI LDVREESCGT RPDSCTVGHQ
201: DMNSSLNYDL LLEFEQQYWG QVLQEKEKPK QEEEEIQQQQ QEQQQQQLQP DLLTVADYGW PWSNDIVNDQ TSWDPNECFD INELLGDLNE PGPHQSQDQN
301: HVNSGSYDLH PLHLEPHDGH EFNGLSSLDI
101: RLWLGTFPTA EKAASAYDEA ATAMYGSLAR LNFPQSVGSE FTSTSSQSEV CTVENKAVVC GDVCVKHEDT DCESNPFSQI LDVREESCGT RPDSCTVGHQ
201: DMNSSLNYDL LLEFEQQYWG QVLQEKEKPK QEEEEIQQQQ QEQQQQQLQP DLLTVADYGW PWSNDIVNDQ TSWDPNECFD INELLGDLNE PGPHQSQDQN
301: HVNSGSYDLH PLHLEPHDGH EFNGLSSLDI
Arabidopsis Description
DREB2BDehydration-responsive element-binding protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O82133]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.