Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G050500.2 | Barley | nucleus | 100.0 | 79.0 |
| HORVU1Hr1G060490.5 | Barley | plasma membrane | 77.64 | 40.71 |
| TraesCS1B01G235100.2 | Wheat | nucleus | 64.56 | 39.43 |
| TraesCS1D01G223600.2 | Wheat | nucleus | 63.71 | 38.62 |
| TraesCS1A01G221900.1 | Wheat | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 62.87 | 36.61 |
| KXG21735 | Sorghum | nucleus | 44.3 | 31.25 |
| HORVU2Hr1G111510.1 | Barley | nucleus | 24.05 | 29.53 |
| Zm00001d010048_P004 | Maize | nucleus | 45.15 | 29.16 |
| CDY36289 | Canola | nucleus | 31.65 | 25.77 |
| Bra034159.1-P | Field mustard | nucleus | 31.22 | 25.52 |
| HORVU1Hr1G063100.1 | Barley | nucleus | 26.58 | 25.4 |
| CDY67039 | Canola | nucleus | 31.22 | 25.34 |
| CDY08557 | Canola | nucleus | 30.38 | 22.93 |
| Bra029889.1-P | Field mustard | nucleus | 30.38 | 22.93 |
| CDY00987 | Canola | nucleus | 29.96 | 22.83 |
| Bra028759.1-P | Field mustard | nucleus | 27.43 | 21.31 |
| CDX70151 | Canola | nucleus | 29.54 | 21.21 |
| CDX98843 | Canola | nucleus | 29.54 | 20.96 |
| Bra009112.1-P | Field mustard | nucleus | 29.11 | 20.91 |
| AT3G11020.1 | Thale cress | nucleus | 28.69 | 20.61 |
| CDY52149 | Canola | nucleus | 28.27 | 20.43 |
| CDY04950 | Canola | nucleus | 27.85 | 20.37 |
| Bra005852.1-P | Field mustard | nucleus | 27.85 | 20.12 |
| AT5G05410.1 | Thale cress | nucleus | 28.27 | 20.0 |
| CDX73896 | Canola | nucleus | 29.96 | 18.59 |
| Bra001386.1-P | Field mustard | nucleus | 29.54 | 18.23 |
| HORVU1Hr1G060060.1 | Barley | nucleus, plastid | 19.83 | 15.31 |
| HORVU1Hr1G070410.1 | Barley | nucleus | 20.68 | 12.66 |
| CDY00719 | Canola | nucleus | 3.8 | 3.8 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | UniProt:A0A287U548 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU6Hr1G050520 | EnsemblPlants:HORVU6Hr1G050520.2 |
| InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31241 |
| PANTHER:PTHR31241:SF16 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000B46F96B | SEG:seg | : |
Description
AP2/EREBP protein [Source:UniProtKB/TrEMBL;Acc:A0A287U548]
Coordinates
chrchr6H:-:306973236..306973949
Molecular Weight (calculated)
25387.4 Da
IEP (calculated)
6.754
GRAVY (calculated)
-0.567
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGKGGPENT QCGFRGVRQR TWGKWVAEIR ESNRVSRLWL GTFPTAEVAA QAYDEAAKAM YGPLARTNFP VQDAQAAPTV VVQVATEGVV RGSSASCEST
101: TTSNHSDVAS SSHNKQLQIQ APEISSQSDL LESTQSVEYI QQQSVPDAVS SIAMSTSEED VYEPLEPISN LPDGEAHCAI SRCFGPRTWP ETWTRRRRGC
201: PAASSTPSSG VPAPALAPQR AEAVPSPRGG NGRRCRG
101: TTSNHSDVAS SSHNKQLQIQ APEISSQSDL LESTQSVEYI QQQSVPDAVS SIAMSTSEED VYEPLEPISN LPDGEAHCAI SRCFGPRTWP ETWTRRRRGC
201: PAASSTPSSG VPAPALAPQR AEAVPSPRGG NGRRCRG
001: MAVYDQSGDR NRTQIDTSRK RKSRSRGDGT TVAERLKRWK EYNETVEEVS TKKRKVPAKG SKKGCMKGKG GPENSRCSFR GVRQRIWGKW VAEIREPNRG
101: SRLWLGTFPT AQEAASAYDE AAKAMYGPLA RLNFPRSDAS EVTSTSSQSE VCTVETPGCV HVKTEDPDCE SKPFSGGVEP MYCLENGAEE MKRGVKADKH
201: WLSEFEHNYW SDILKEKEKQ KEQGIVETCQ QQQQDSLSVA DYGLNQDRYP GNSVANGSYR PESQQSGFDP LQSLNYGIPP FQLEGKDGNG FFDDLSYLDL
301: EN
101: SRLWLGTFPT AQEAASAYDE AAKAMYGPLA RLNFPRSDAS EVTSTSSQSE VCTVETPGCV HVKTEDPDCE SKPFSGGVEP MYCLENGAEE MKRGVKADKH
201: WLSEFEHNYW SDILKEKEKQ KEQGIVETCQ QQQQDSLSVA DYGLNQDRYP GNSVANGSYR PESQQSGFDP LQSLNYGIPP FQLEGKDGNG FFDDLSYLDL
301: EN
Arabidopsis Description
DREB2ADehydration-responsive element-binding protein 2A [Source:UniProtKB/Swiss-Prot;Acc:O82132]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.