Factsheet for HORVU3Hr1G065580.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G060490.5
HORVU6Hr1G050500.2
HORVU6Hr1G050520.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46780.1	HORVU1Hr1G060490.5	AT5G05410.1	18552202
AT3G46780.1	HORVU6Hr1G050500.2	AT5G05410.1	18552202
AT3G46780.1	HORVU6Hr1G050520.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77707	Sorghum	cytosol, mitochondrion, nucleus	42.42	59.04
TraesCS3B01G289600.2	Wheat	plastid	82.25	38.15
TraesCS3A01G256400.2	Wheat	plastid	81.82	37.95
TraesCS3D01G256700.2	Wheat	plastid	81.39	37.75
Os05t0291700-02	Rice	plastid	58.44	27.27
Zm00001d009877_P001	Maize	plastid	50.65	23.59
GSMUA_Achr10P...	Banana	mitochondrion	45.02	19.85
VIT_06s0004g05230.t01	Wine grape	plastid	44.16	19.77
KRH24736	Soybean	nucleus, plastid	40.26	18.13
KRH29743	Soybean	plastid	40.26	18.02
PGSC0003DMT400005492	Potato	plastid	38.1	17.78
CDX68407	Canola	plastid	38.1	17.6
Solyc06g005710.2.1	Tomato	plastid	36.8	17.14
AT3G46780.1	Thale cress	plastid	37.66	17.06
CDX83004	Canola	plastid	37.23	16.83
Bra033802.1-P	Field mustard	plastid	37.23	16.83
OQU77706	Sorghum	plastid	12.99	8.06

Protein Annotations

EnsemblPlants:HORVU3Hr1G065580.2	EnsemblPlantsGene:HORVU3Hr1G065580	ncoils:Coil	PANTHER:PTHR14194	PANTHER:PTHR14194:SF38	SEG:seg
UniParc:UPI000B476D3B	UniProt:A0A287LEJ0	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:499361170..499364767

Molecular Weight (calculated)

25255.1 Da

IEP (calculated)

10.411

GRAVY (calculated)

-0.571

Length

231 amino acids

Sequence
(BLAST)

001: MGWSWPKRVR PARRLPPPTL ARCPSCRLLP LWLMFSPTLR SQRTSQVVEV STSSLGTSKP TVEALTAIPE DIRRKEYQEA AANARAQEEA LASQRAADAQ
101: EPTSKLKTEG KDTTSEEAVT STVNEAQASL ENLLTRAKGL KLSTDFSWDK FSTQLAAAGA AARGSDEEEP RAQIATVRGQ AKAKKLAPQR AVVKPVAQKV
201: KQATMQPAPK KEVRPVFGGL FKQETIFVDE D

Best Arabidopsis Sequence Match ( AT3G46780.1 )
(BLAST)

001: MASSSTSFPL TTAPPQGVRF NRRKPRLTVW AKQTAFQLGK TKGDDDSEGK QKGKNPFQFD FGKLPDMKSL IPVVTNPSTG LVFGNNRKKD PGTIFVAGAT
101: GQAGIRIAQT LLQRGFSVRA GVPDLGAAQD LARVAATYKI LSNDEVKRLN AVQSPFQDAE SIAKAIGNAT KVVVTVGATE NGPDAQVSTS DALLVVQAAE
201: LAGVSHVAIV YDGTISGSTY NVLDGITSFF GNLFAKSQPL TISDLIEKVA QTDVAYTLIK TSLTEDFSPE KAYNVVVSAE GSNSGSGSSS SEAYKVPKLK
301: IASLVADIFA NTAVAENKVV EVSTDPSAPS RPVDELFSVI PEDGRRKVYA DAIARERAEE EAKVAADKAR EAAEAAKEFE KQMQKLSEKE AEAASLAEDA
401: QQKADAVGVT VDGLFNKAKD ISSGLSWNKL GSQFATAIQN ASETPKVQVA TVRGQAKARN LPPKKAVVKQ RPSSPFASKP KEERPKKPEK EVRKVFGGLF
501: KQETIYIDDD

Arabidopsis Description

PTAC16Protein plastid transcriptionally active 16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STF2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.