CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46780.1	CDX70151	AT5G05410.1	18552202
AT3G46780.1	CDX98843	AT5G05410.1	18552202
AT3G46780.1	CDY04950	AT5G05410.1	18552202
AT3G46780.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83004	Canola	plastid	95.4	93.35
AT3G46780.1	Thale cress	plastid	84.2	82.55
VIT_06s0004g05230.t01	Wine grape	plastid	63.4	61.43
KRH29743	Soybean	plastid	63.0	61.05
KRH24736	Soybean	nucleus, plastid	62.2	60.62
PGSC0003DMT400005492	Potato	plastid	58.2	58.79
Solyc06g005710.2.1	Tomato	plastid	57.8	58.27
GSMUA_Achr10P...	Banana	mitochondrion	57.8	55.15
Os05t0291700-02	Rice	plastid	50.6	51.11
TraesCS3A01G256400.2	Wheat	plastid	49.6	49.8
TraesCS3D01G256700.2	Wheat	plastid	49.6	49.8
TraesCS3B01G289600.2	Wheat	plastid	49.0	49.2
Zm00001d009877_P001	Maize	plastid	47.8	48.19
OQU77706	Sorghum	plastid	35.2	47.31
OQU77707	Sorghum	cytosol, mitochondrion, nucleus	13.6	40.96
HORVU3Hr1G065580.2	Barley	mitochondrion	17.6	38.1

Protein Annotations

EnsemblPlants:CDX68407	EnsemblPlantsGene:GSBRNA2T00125794001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	ncoils:Coil
PANTHER:PTHR14194	PANTHER:PTHR14194:SF95	PFAM:PF13460	ProteinID:CDX68407	ProteinID:CDX68407.1	SEG:seg
SUPFAM:SSF51735	UniParc:UPI0004EE6270	MapMan:15.6.1.2.3.6	:	:	:

Description

BnaC01g24850D

Coordinates

chrLK031788:+:850607..853077

Molecular Weight (calculated)

53015.7 Da

IEP (calculated)

9.002

GRAVY (calculated)

-0.286

Length

500 amino acids

Sequence
(BLAST)

001: MASSSTSFLL TTAPGAKFNR RKPVLTVWAA KQTGFQLGKP KGDDSEGKQT GKSPDSNPFR FDFGKLPDMK SLMPVVTNPS TGLAFGNNRR KDPGTVFVAG
101: ATGQAGIRIA QTLLQRGFSV RAGVPDLVAA QDLARVAATY KILSKDEIKR LNAVESPFQD AESIAKAIGN ATKVVVTIGA TENGPDTPVS TSDALVVVQA
201: AELAGVSHVT IVYDGSIGGS TYNVLDGITS FFSNLFAQSQ PLSISELIEK VAQTDVAYTL IKTSLTEDFS PEKSYNVVVS AEGSNSGSGS SSSEAYKVPK
301: LKIASMVADI FANTAVAENK VVDVSTDPSA PSRPLDELFS VIPEDGRRKM YAAAMAKARA EEEAKVAAEK AQEAAEAAKE LEKQMLKLSE KEAEAASLAE
401: DAQKKAEAAK DIRSGLSWNT LGSQIATAVQ NASETPKVQV ATVRGQAKAR NLPPKKAVVK PATAAFASKQ KEERLKEPEK EVRKVFGGLF KQETIYVDDD

Best Arabidopsis Sequence Match ( AT3G46780.1 )
(BLAST)

001: MASSSTSFPL TTAPPQGVRF NRRKPRLTVW AKQTAFQLGK TKGDDDSEGK QKGKNPFQFD FGKLPDMKSL IPVVTNPSTG LVFGNNRKKD PGTIFVAGAT
101: GQAGIRIAQT LLQRGFSVRA GVPDLGAAQD LARVAATYKI LSNDEVKRLN AVQSPFQDAE SIAKAIGNAT KVVVTVGATE NGPDAQVSTS DALLVVQAAE
201: LAGVSHVAIV YDGTISGSTY NVLDGITSFF GNLFAKSQPL TISDLIEKVA QTDVAYTLIK TSLTEDFSPE KAYNVVVSAE GSNSGSGSSS SEAYKVPKLK
301: IASLVADIFA NTAVAENKVV EVSTDPSAPS RPVDELFSVI PEDGRRKVYA DAIARERAEE EAKVAADKAR EAAEAAKEFE KQMQKLSEKE AEAASLAEDA
401: QQKADAVGVT VDGLFNKAKD ISSGLSWNKL GSQFATAIQN ASETPKVQVA TVRGQAKARN LPPKKAVVKQ RPSSPFASKP KEERPKKPEK EVRKVFGGLF
501: KQETIYIDDD

Arabidopsis Description

PTAC16Protein plastid transcriptionally active 16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STF2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.