Factsheet for TraesCS3A01G256400.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221900.1
TraesCS1B01G235100.2
TraesCS1D01G223600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46780.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT3G46780.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT3G46780.1	TraesCS1D01G223600.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G256700.2	Wheat	plastid	98.59	98.59
TraesCS3B01G289600.2	Wheat	plastid	98.39	98.39
HORVU3Hr1G065580.2	Barley	mitochondrion	37.95	81.82
Os05t0291700-02	Rice	plastid	75.1	75.56
OQU77706	Sorghum	plastid	52.01	69.62
Zm00001d009877_P001	Maize	plastid	68.88	69.15
OQU77707	Sorghum	cytosol, mitochondrion, nucleus	20.08	60.24
GSMUA_Achr10P...	Banana	mitochondrion	55.22	52.48
KRH24736	Soybean	nucleus, plastid	52.61	51.07
KRH29743	Soybean	plastid	52.41	50.58
VIT_06s0004g05230.t01	Wine grape	plastid	51.41	49.61
CDX68407	Canola	plastid	49.8	49.6
PGSC0003DMT400005492	Potato	plastid	49.0	49.29
CDX83004	Canola	plastid	49.2	47.95
Solyc06g005710.2.1	Tomato	plastid	47.59	47.78
Bra033802.1-P	Field mustard	plastid	49.0	47.75
AT3G46780.1	Thale cress	plastid	48.39	47.25

Protein Annotations

MapMan:15.6.1.2.3.6	Gene3D:3.40.50.720	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0007623	GO:GO:0008150	GO:GO:0009295	GO:GO:0009507	GO:GO:0009508
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009941	GO:GO:0016020
GO:GO:0042644	GO:GO:0098572	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460	PANTHER:PTHR14194
PANTHER:PTHR14194:SF38	SUPFAM:SSF51735	EnsemblPlantsGene:TraesCS3A01G256400	EnsemblPlants:TraesCS3A01G256400.2	SEG:seg	:

Description

No Description!

Coordinates

chr3A:+:478253788..478257243

Molecular Weight (calculated)

52523.9 Da

IEP (calculated)

5.492

GRAVY (calculated)

-0.245

Length

498 amino acids

Sequence
(BLAST)

001: MPPALTSNPP SFRPLSSPLR RRAPSFLCRV GAGKPGADEE AKKNPFFVDF SGKFEDAKSL IPAFPSPGTG SLFAGGRGKK DQQTVFVAGA TGQTGVRIAQ
101: TLLRQGFAVR AGVPDLASAQ ELARLAAAYR LISPAEARRL NAVESDFDDT EAIAKSIGPA AKVVITVGPV EKGLEGGPVT TEDALRVVQA ADLAGVAHVV
201: VVYDEGAGGV NGASTNSVLN GFTSFFSNLF SRVQTLPLSE FLAKVVETDV KYTLVKASLT EDYDPESSYG LVLAKEGSSS TTTSSTDTGK VSKLQIASLV
301: ADVFSNIEIA ENKVVEVSTS SLGTSKPTVE ALTAIPEDIR RKEYQEAAAN ARAQEEALAS QRAADAEEPT TKLKTEGKDT TSEEAGASTV NEAQASLENL
401: LTRAKGLKLN TDFSWDKFST QLAAVGATAR SSDEEEPRAQ IATVRGQAKA KKLAPQRAVV KPVAQKVKQA AMQPAPKKEV RPVFGGLFKQ ETIFVDED

Best Arabidopsis Sequence Match ( AT3G46780.1 )
(BLAST)

001: MASSSTSFPL TTAPPQGVRF NRRKPRLTVW AKQTAFQLGK TKGDDDSEGK QKGKNPFQFD FGKLPDMKSL IPVVTNPSTG LVFGNNRKKD PGTIFVAGAT
101: GQAGIRIAQT LLQRGFSVRA GVPDLGAAQD LARVAATYKI LSNDEVKRLN AVQSPFQDAE SIAKAIGNAT KVVVTVGATE NGPDAQVSTS DALLVVQAAE
201: LAGVSHVAIV YDGTISGSTY NVLDGITSFF GNLFAKSQPL TISDLIEKVA QTDVAYTLIK TSLTEDFSPE KAYNVVVSAE GSNSGSGSSS SEAYKVPKLK
301: IASLVADIFA NTAVAENKVV EVSTDPSAPS RPVDELFSVI PEDGRRKVYA DAIARERAEE EAKVAADKAR EAAEAAKEFE KQMQKLSEKE AEAASLAEDA
401: QQKADAVGVT VDGLFNKAKD ISSGLSWNKL GSQFATAIQN ASETPKVQVA TVRGQAKARN LPPKKAVVKQ RPSSPFASKP KEERPKKPEK EVRKVFGGLF
501: KQETIYIDDD

Arabidopsis Description

PTAC16Protein plastid transcriptionally active 16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STF2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.