CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24736	Soybean	nucleus, plastid	92.05	92.59
VIT_06s0004g05230.t01	Wine grape	plastid	69.96	69.96
Bra033802.1-P	Field mustard	plastid	63.57	64.19
CDX83004	Canola	plastid	63.57	64.19
AT3G46780.1	Thale cress	plastid	63.18	63.92
Solyc06g005710.2.1	Tomato	plastid	61.24	63.71
PGSC0003DMT400005492	Potato	plastid	60.66	63.23
CDX68407	Canola	plastid	61.05	63.0
GSMUA_Achr10P...	Banana	mitochondrion	58.72	57.82
Os05t0291700-02	Rice	plastid	51.74	53.94
TraesCS3D01G256700.2	Wheat	plastid	50.58	52.41
TraesCS3A01G256400.2	Wheat	plastid	50.58	52.41
Zm00001d009877_P001	Maize	plastid	49.81	51.81
TraesCS3B01G289600.2	Wheat	plastid	50.0	51.81
OQU77706	Sorghum	plastid	35.66	49.46
OQU77707	Sorghum	cytosol, mitochondrion, nucleus	13.18	40.96
HORVU3Hr1G065580.2	Barley	mitochondrion	18.02	40.26

Protein Annotations

EMBL:ACUP02006818	EnsemblPlants:KRH29743	EnsemblPlantsGene:GLYMA_11G135900	EntrezGene:100801140	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	ncoils:Coil	PANTHER:PTHR14194	PANTHER:PTHR14194:SF95	PFAM:PF13460	ProteinID:ACJ61485.1
ProteinID:KRH29743	ProteinID:KRH29743.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI000233D295	UniProt:I1LJY2
MapMan:15.6.1.2.3.6	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:10332835..10336176

Molecular Weight (calculated)

55546.0 Da

IEP (calculated)

9.246

GRAVY (calculated)

-0.499

Length

516 amino acids

Sequence
(BLAST)

001: MAPTLTSNSS FLSTSPHSRV SLRNPRLRVF AKKSGSFPSF GLGKPKDDSS SAEEKDNSSN SNPFRLDFGK IPDVTSLIPV PSNTSAPGFS FGNTRRKDPS
101: TVFVAGATGQ AGIRIAQTLL REGFSVRAGV PELGSAQELA RLATQYKIIS NEQAKRLNAV QSSFDNADTI AKAIGNAGKV VVTIGPTENG PTAEVSSSDA
201: LQVVQAAQLA GVGHVAIVYD ESSTGASTYN VLDGLSSFFN NLFSRSQPLT IQEFLQKVIE TDVKYTFIKT SLTDDFSPES SYNVVVLGEG SASANDYKVA
301: KSKIASLVAD VFSNTEVAEN KVVKVHSDPS APLKRVDELF SPIPEDGRRK AYAEMQEKTK AEEEARVAAE KAREASESAK KLEEEVKRLS QQETRAASLA
401: QEAQEKAEAG GASVENLLNK AKDFGAGFSW EKLSSQITTS IQKPDEDEKP KVQLATVRGQ AKARNLAPNK AVVKQTPQRS AAKPKVEKPK QTETPKEVRK
501: VFGGLFKQET IYVDDD

Best Arabidopsis Sequence Match ( AT3G46780.1 )
(BLAST)

001: MASSSTSFPL TTAPPQGVRF NRRKPRLTVW AKQTAFQLGK TKGDDDSEGK QKGKNPFQFD FGKLPDMKSL IPVVTNPSTG LVFGNNRKKD PGTIFVAGAT
101: GQAGIRIAQT LLQRGFSVRA GVPDLGAAQD LARVAATYKI LSNDEVKRLN AVQSPFQDAE SIAKAIGNAT KVVVTVGATE NGPDAQVSTS DALLVVQAAE
201: LAGVSHVAIV YDGTISGSTY NVLDGITSFF GNLFAKSQPL TISDLIEKVA QTDVAYTLIK TSLTEDFSPE KAYNVVVSAE GSNSGSGSSS SEAYKVPKLK
301: IASLVADIFA NTAVAENKVV EVSTDPSAPS RPVDELFSVI PEDGRRKVYA DAIARERAEE EAKVAADKAR EAAEAAKEFE KQMQKLSEKE AEAASLAEDA
401: QQKADAVGVT VDGLFNKAKD ISSGLSWNKL GSQFATAIQN ASETPKVQVA TVRGQAKARN LPPKKAVVKQ RPSSPFASKP KEERPKKPEK EVRKVFGGLF
501: KQETIYIDDD

Arabidopsis Description

PTAC16Protein plastid transcriptionally active 16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STF2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.