CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG21735

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46780.1	KXG21735	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G065580.2	Barley	mitochondrion	59.04	42.42
TraesCS3B01G289600.2	Wheat	plastid	60.84	20.28
TraesCS3D01G256700.2	Wheat	plastid	60.84	20.28
TraesCS3A01G256400.2	Wheat	plastid	60.24	20.08
Os05t0291700-02	Rice	plastid	58.43	19.6
VIT_06s0004g05230.t01	Wine grape	plastid	46.99	15.12
GSMUA_Achr10P...	Banana	mitochondrion	43.98	13.93
KRH24736	Soybean	nucleus, plastid	42.17	13.65
CDX68407	Canola	plastid	40.96	13.6
KRH29743	Soybean	plastid	40.96	13.18
Bra033802.1-P	Field mustard	plastid	40.36	13.11
CDX83004	Canola	plastid	40.36	13.11
AT3G46780.1	Thale cress	plastid	39.16	12.75
PGSC0003DMT400005492	Potato	plastid	37.35	12.53
Solyc06g005710.2.1	Tomato	plastid	37.35	12.5
OQU77706	Sorghum	plastid	3.61	1.61

Protein Annotations

EnsemblPlants:OQU77707	EnsemblPlantsGene:SORBI_3009G091850	PANTHER:PTHR14194	PANTHER:PTHR14194:SF38	ProteinID:OQU77707	ProteinID:OQU77707.1
SEG:seg	UniParc:UPI000B8BA9A8	UniProt:A0A1Z5R1Q5	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr9:+:20083369..20085028

Molecular Weight (calculated)

18243.4 Da

IEP (calculated)

6.989

GRAVY (calculated)

-0.743

Length

166 amino acids

Sequence
(BLAST)

001: MGAIPEDSRR TEYQDAAAKA QVKEETLASK QANEAEAAAS KYEADTKKAP LEDAAATASP VNDERASLEN LLSIPKVIST DFFWEKFSTQ LAEVTTPRTS
101: LQKEPKAQIA TVRGQEKAKK LTPRIATVKP AAQKVKQQLK QPDPKPEVRP VFGGLFKQET VYVDDD

Best Arabidopsis Sequence Match ( AT3G46780.1 )
(BLAST)

001: MASSSTSFPL TTAPPQGVRF NRRKPRLTVW AKQTAFQLGK TKGDDDSEGK QKGKNPFQFD FGKLPDMKSL IPVVTNPSTG LVFGNNRKKD PGTIFVAGAT
101: GQAGIRIAQT LLQRGFSVRA GVPDLGAAQD LARVAATYKI LSNDEVKRLN AVQSPFQDAE SIAKAIGNAT KVVVTVGATE NGPDAQVSTS DALLVVQAAE
201: LAGVSHVAIV YDGTISGSTY NVLDGITSFF GNLFAKSQPL TISDLIEKVA QTDVAYTLIK TSLTEDFSPE KAYNVVVSAE GSNSGSGSSS SEAYKVPKLK
301: IASLVADIFA NTAVAENKVV EVSTDPSAPS RPVDELFSVI PEDGRRKVYA DAIARERAEE EAKVAADKAR EAAEAAKEFE KQMQKLSEKE AEAASLAEDA
401: QQKADAVGVT VDGLFNKAKD ISSGLSWNKL GSQFATAIQN ASETPKVQVA TVRGQAKARN LPPKKAVVKQ RPSSPFASKP KEERPKKPEK EVRKVFGGLF
501: KQETIYIDDD

Arabidopsis Description

PTAC16Protein plastid transcriptionally active 16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STF2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.