Factsheet for Solyc06g005710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005492	Potato	plastid	95.16	95.35
VIT_06s0004g05230.t01	Wine grape	plastid	65.12	62.6
KRH29743	Soybean	plastid	63.71	61.24
KRH24736	Soybean	nucleus, plastid	61.49	59.45
AT3G46780.1	Thale cress	plastid	59.68	58.04
CDX68407	Canola	plastid	58.27	57.8
Bra033802.1-P	Field mustard	plastid	59.48	57.73
CDX83004	Canola	plastid	59.27	57.53
GSMUA_Achr10P...	Banana	mitochondrion	54.03	51.15
Os05t0291700-02	Rice	plastid	50.4	50.51
Zm00001d009877_P001	Maize	plastid	47.98	47.98
TraesCS3A01G256400.2	Wheat	plastid	47.78	47.59
TraesCS3B01G289600.2	Wheat	plastid	47.78	47.59
TraesCS3D01G256700.2	Wheat	plastid	47.78	47.59
OQU77706	Sorghum	plastid	35.48	47.31
OQU77707	Sorghum	cytosol, mitochondrion, nucleus	12.5	37.35
HORVU3Hr1G065580.2	Barley	mitochondrion	17.14	36.8

Protein Annotations

EnsemblPlants:Solyc06g005710.2.1	EnsemblPlantsGene:Solyc06g005710.2	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	ncoils:Coil
PANTHER:PTHR14194	PANTHER:PTHR14194:SF38	PFAM:PF13460	SEG:seg	SUPFAM:SSF51735	UniParc:UPI0002765D29
UniProt:K4C353	MapMan:15.6.1.2.3.6	:	:	:	:

Description

No Description!

Coordinates

chr6:+:759915..763838

Molecular Weight (calculated)

52989.2 Da

IEP (calculated)

8.570

GRAVY (calculated)

-0.365

Length

496 amino acids

Sequence
(BLAST)

001: MAPTLTSNSF LLSTTPHPRL SFKNPRFIVS AKKSGQNQET TTNSGNPFNF DFGKLPDVTS LIPASTNTSS GLSFGRQRAK DPGTVFVAGA TGQAGIRIAQ
101: LLLREGYSVR AGVSDLGAAQ ELARLAVSYK VISNDESKRL NAVASSFQDA ESIAKAIGNA NKVVVTISKG EDGPATEVTT TDAVQVIEAA QLAGVGHVAI
201: VYDESSPVGS TYNVLDGITS FFNNLFSKSQ PLTIAEFLQK IVETDLSYTL IKTRLTDDFS PESSYKIVVS AEGSADADAY KVGKSQIAKL VVDVFSNTAV
301: AENKVVEVFA DPSAPPKTVD ELFSVIPEDG RRKAYAEALE KSKAEEEARG VAEASKRQEQ EAKKLEKKEA KAAATIAKEP EEKASSPSVP SVESLLDKAK
401: DFSTGFSFEK LSSQLKSAVE KANEESDAQV ATVRGQAKAK NLPAQKAVVK TPPRKPFASK TKKEAPKPAK QTEVASTEKR KIFGGLFQQE TIYVDD

Best Arabidopsis Sequence Match ( AT3G46780.1 )
(BLAST)

001: MASSSTSFPL TTAPPQGVRF NRRKPRLTVW AKQTAFQLGK TKGDDDSEGK QKGKNPFQFD FGKLPDMKSL IPVVTNPSTG LVFGNNRKKD PGTIFVAGAT
101: GQAGIRIAQT LLQRGFSVRA GVPDLGAAQD LARVAATYKI LSNDEVKRLN AVQSPFQDAE SIAKAIGNAT KVVVTVGATE NGPDAQVSTS DALLVVQAAE
201: LAGVSHVAIV YDGTISGSTY NVLDGITSFF GNLFAKSQPL TISDLIEKVA QTDVAYTLIK TSLTEDFSPE KAYNVVVSAE GSNSGSGSSS SEAYKVPKLK
301: IASLVADIFA NTAVAENKVV EVSTDPSAPS RPVDELFSVI PEDGRRKVYA DAIARERAEE EAKVAADKAR EAAEAAKEFE KQMQKLSEKE AEAASLAEDA
401: QQKADAVGVT VDGLFNKAKD ISSGLSWNKL GSQFATAIQN ASETPKVQVA TVRGQAKARN LPPKKAVVKQ RPSSPFASKP KEERPKKPEK EVRKVFGGLF
501: KQETIYIDDD

Arabidopsis Description

PTAC16Protein plastid transcriptionally active 16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STF2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.