Factsheet for VIT_06s0004g05230.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29743	Soybean	plastid	69.96	69.96
KRH24736	Soybean	nucleus, plastid	68.8	69.2
PGSC0003DMT400005492	Potato	plastid	63.18	65.86
Solyc06g005710.2.1	Tomato	plastid	62.6	65.12
Bra033802.1-P	Field mustard	plastid	62.79	63.41
CDX68407	Canola	plastid	61.43	63.4
CDX83004	Canola	plastid	62.6	63.21
AT3G46780.1	Thale cress	plastid	61.63	62.35
GSMUA_Achr10P...	Banana	mitochondrion	58.72	57.82
Os05t0291700-02	Rice	plastid	51.16	53.33
TraesCS3A01G256400.2	Wheat	plastid	49.61	51.41
TraesCS3D01G256700.2	Wheat	plastid	49.42	51.2
TraesCS3B01G289600.2	Wheat	plastid	49.03	50.8
Zm00001d009877_P001	Maize	plastid	48.64	50.6
OQU77706	Sorghum	plastid	33.91	47.04
OQU77707	Sorghum	cytosol, mitochondrion, nucleus	15.12	46.99
HORVU3Hr1G065580.2	Barley	mitochondrion	19.77	44.16

Protein Annotations

EntrezGene:100246732	wikigene:100246732	MapMan:15.6.1.2.3.6	Gene3D:3.40.50.720	ProteinID:CCB43544	ProteinID:CCB43544.1
ncoils:Coil	UniProt:F6GUY5	EMBL:FN594951	EntrezGene:LOC100246732	wikigene:LOC100246732	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460	PANTHER:PTHR14194	PANTHER:PTHR14194:SF38	SUPFAM:SSF51735	TIGR:TC58981
TIGR:TC68897	UniParc:UPI00015C81BC	ArrayExpress:VIT_06s0004g05230	EnsemblPlantsGene:VIT_06s0004g05230	EnsemblPlants:VIT_06s0004g05230.t01	unigene:Vvi.4055
RefSeq:XP_002282730	RefSeq:XP_002282730.1	RefSeq:XP_019076105.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:6139783..6142356

Molecular Weight (calculated)

55044.1 Da

IEP (calculated)

9.516

GRAVY (calculated)

-0.300

Length

516 amino acids

Sequence
(BLAST)

001: MAPTLTSNSF LLTTPPHPRL TLKNPSLRVY AKRAGPLSAF RLGKQSDGPS EESQENGSAN SAPFSFNFGK VSDVSSLIPV MTKPSSGLSF GRRKDPGTVF
101: VAGATGQAGI RIAQALLREG FSVRAGVSDL GAAQELARLG AKYKIISNEE SKRLNAVESS FQDAESIAKA IGNASKVVVT IGPGENGPTA EVTPLDALQV
201: IQAADLAGVG HVAIIYDESP FVSSTYNVID GISTFFNNLF SRSQPLTVTE FLQKVVETDV SYTLIRTNLT EDFSPESSYN VVVSAEGSVS SNDYKVATSQ
301: IASLVANVFS NTAVAENKVV KVFTDPGAPS KPAVELFSAI PKDGRREAYA EALAKAKAEE EALKATEKAR EAAEAAKKLE QEVKKLSEQE TRAATLADEA
401: KEKAEAAGAS VEVFLSKAKD LGSGLSWEKF SSQLAISVQK PTEKPKVQIA TVRGQAKARS LQPKKAVVKL PTFPRPPAFK PKEEPKPKGK QPESKAEVRK
501: VFGGLFKQET IYIDDD

Best Arabidopsis Sequence Match ( AT3G46780.1 )
(BLAST)

001: MASSSTSFPL TTAPPQGVRF NRRKPRLTVW AKQTAFQLGK TKGDDDSEGK QKGKNPFQFD FGKLPDMKSL IPVVTNPSTG LVFGNNRKKD PGTIFVAGAT
101: GQAGIRIAQT LLQRGFSVRA GVPDLGAAQD LARVAATYKI LSNDEVKRLN AVQSPFQDAE SIAKAIGNAT KVVVTVGATE NGPDAQVSTS DALLVVQAAE
201: LAGVSHVAIV YDGTISGSTY NVLDGITSFF GNLFAKSQPL TISDLIEKVA QTDVAYTLIK TSLTEDFSPE KAYNVVVSAE GSNSGSGSSS SEAYKVPKLK
301: IASLVADIFA NTAVAENKVV EVSTDPSAPS RPVDELFSVI PEDGRRKVYA DAIARERAEE EAKVAADKAR EAAEAAKEFE KQMQKLSEKE AEAASLAEDA
401: QQKADAVGVT VDGLFNKAKD ISSGLSWNKL GSQFATAIQN ASETPKVQVA TVRGQAKARN LPPKKAVVKQ RPSSPFASKP KEERPKKPEK EVRKVFGGLF
501: KQETIYIDDD

Arabidopsis Description

PTAC16Protein plastid transcriptionally active 16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STF2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.