Factsheet for Bra033802.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005852.1-P
Bra009112.1-P
Bra028759.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46780.1	Bra005852.1-P	AT5G05410.1	18552202
AT3G46780.1	Bra009112.1-P	AT5G05410.1	18552202
AT3G46780.1	Bra028759.1-P	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83004	Canola	plastid	99.22	99.22
AT3G46780.1	Thale cress	plastid	86.3	86.47
KRH29743	Soybean	plastid	64.19	63.57
VIT_06s0004g05230.t01	Wine grape	plastid	63.41	62.79
KRH24736	Soybean	nucleus, plastid	63.01	62.77
PGSC0003DMT400005492	Potato	plastid	58.12	60.0
Solyc06g005710.2.1	Tomato	plastid	57.73	59.48
GSMUA_Achr10P...	Banana	mitochondrion	58.32	56.87
Os05t0291700-02	Rice	plastid	49.32	50.91
TraesCS3A01G256400.2	Wheat	plastid	47.75	49.0
TraesCS3D01G256700.2	Wheat	plastid	47.55	48.8
TraesCS3B01G289600.2	Wheat	plastid	47.16	48.39
Zm00001d009877_P001	Maize	plastid	46.38	47.78
OQU77706	Sorghum	plastid	34.44	47.31
OQU77707	Sorghum	cytosol, mitochondrion, nucleus	13.11	40.36
HORVU3Hr1G065580.2	Barley	mitochondrion	16.83	37.23

Protein Annotations

MapMan:15.6.1.2.3.6	Gene3D:3.40.50.720	EnsemblPlantsGene:Bra033802	EnsemblPlants:Bra033802.1	EnsemblPlants:Bra033802.1-P	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0007623	GO:GO:0008150
GO:GO:0009295	GO:GO:0009507	GO:GO:0009508	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009941	GO:GO:0016020	GO:GO:0042644	GO:GO:0098572	UniProt:M4EYB0
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460	PANTHER:PTHR14194	PANTHER:PTHR14194:SF95	SUPFAM:SSF51735
UniParc:UPI0002543B96	SEG:seg	:	:	:	:

Description

AT3G46780 (E=5e-199) PTAC16 | PTAC16 (PLASTID TRANSCRIPTIONALLY ACTIVE 16); binding / catalytic

Coordinates

chrA01:+:14030591..14032643

Molecular Weight (calculated)

54120.0 Da

IEP (calculated)

8.589

GRAVY (calculated)

-0.283

Length

511 amino acids

Sequence
(BLAST)

001: MTSSSTSFLL TTAPGAKFNR RKPVLTVWAA KQTGFQLGKP KGDDSEGKQT GKSPDSNPFR FDFGKLPDMK SLMPVVTNPS TGLAFGNNRR KDPGTVFVAG
101: ATGQAGIRIA QTLLQRGFSV RAGVPDLGAA QDLARVAATY KILSKDEIKR LNAVESPFQD AESIAKAIGN ATKVVVTIGA TENGPDTPVS TSDALVLVQA
201: AELAGVSHVT IVYDGSIGGS TYNVLDGITS FFSNLFAQSQ PLTISELIEK VAQTDVAYTL IKTSLTEDFS PEKSYNVVVS AEGSNSGSGS SSSEAYKVPK
301: LKIASMVADI FANTAVAENK VVEVSTDPSA PSRPLDELFS VIPEDGRRKM YADAMAKARA EEEAKVAAEK AQEAAQAAKE LEKQMLKLSE KEAEAASLAE
401: DAQKKAEAVG ISVDGLFNKA KDIGSGLSWN TLGSQIATAV QNASETPKVQ VATVRGQAKA RNLPPKKAVV KPATAAFASK QKEERLKEPE KEVRKVFGGL
501: FKQETIYVDD D

Best Arabidopsis Sequence Match ( AT3G46780.1 )
(BLAST)

001: MASSSTSFPL TTAPPQGVRF NRRKPRLTVW AKQTAFQLGK TKGDDDSEGK QKGKNPFQFD FGKLPDMKSL IPVVTNPSTG LVFGNNRKKD PGTIFVAGAT
101: GQAGIRIAQT LLQRGFSVRA GVPDLGAAQD LARVAATYKI LSNDEVKRLN AVQSPFQDAE SIAKAIGNAT KVVVTVGATE NGPDAQVSTS DALLVVQAAE
201: LAGVSHVAIV YDGTISGSTY NVLDGITSFF GNLFAKSQPL TISDLIEKVA QTDVAYTLIK TSLTEDFSPE KAYNVVVSAE GSNSGSGSSS SEAYKVPKLK
301: IASLVADIFA NTAVAENKVV EVSTDPSAPS RPVDELFSVI PEDGRRKVYA DAIARERAEE EAKVAADKAR EAAEAAKEFE KQMQKLSEKE AEAASLAEDA
401: QQKADAVGVT VDGLFNKAKD ISSGLSWNKL GSQFATAIQN ASETPKVQVA TVRGQAKARN LPPKKAVVKQ RPSSPFASKP KEERPKKPEK EVRKVFGGLF
501: KQETIYIDDD

Arabidopsis Description

PTAC16Protein plastid transcriptionally active 16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STF2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.