CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG21735

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46780.1	KXG21735	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009877_P001	Maize	plastid	77.96	58.47
Os05t0291700-02	Rice	plastid	71.51	53.74
TraesCS3A01G256400.2	Wheat	plastid	69.62	52.01
TraesCS3D01G256700.2	Wheat	plastid	69.09	51.61
TraesCS3B01G289600.2	Wheat	plastid	69.09	51.61
GSMUA_Achr10P...	Banana	mitochondrion	52.69	37.4
PGSC0003DMT400005492	Potato	plastid	48.12	36.16
KRH24736	Soybean	nucleus, plastid	49.73	36.06
KRH29743	Soybean	plastid	49.46	35.66
Solyc06g005710.2.1	Tomato	plastid	47.31	35.48
CDX68407	Canola	plastid	47.31	35.2
Bra033802.1-P	Field mustard	plastid	47.31	34.44
CDX83004	Canola	plastid	47.04	34.25
AT3G46780.1	Thale cress	plastid	46.77	34.12
VIT_06s0004g05230.t01	Wine grape	plastid	47.04	33.91
HORVU3Hr1G065580.2	Barley	mitochondrion	8.06	12.99
OQU77707	Sorghum	cytosol, mitochondrion, nucleus	1.61	3.61

Protein Annotations

EnsemblPlants:OQU77706	EnsemblPlantsGene:SORBI_3009G091800	EntrezGene:8066748	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR14194	PANTHER:PTHR14194:SF38	PFAM:PF13460	ProteinID:OQU77706	ProteinID:OQU77706.1	SEG:seg
SUPFAM:SSF51735	unigene:Sbi.20232	UniParc:UPI000B425187	UniProt:A0A1Z5R2W3	MapMan:15.6.1.2.3.6	:

Description

hypothetical protein

Coordinates

chr9:+:20059128..20070827

Molecular Weight (calculated)

38938.4 Da

IEP (calculated)

8.774

GRAVY (calculated)

0.101

Length

372 amino acids

Sequence
(BLAST)

001: MAPALTSNPP SFRPLSFPFR RRAATVLCRV GKPGKDSAAD DAAPKKRPNL FADFGKLADA TSLIPAFPSS AAGSLFTGGG RGRKDPQMVF VAGATGQTGV
101: RIAQTLLRQG FAVRAGVPDL ASAQELARLA AAYRLISPAE ARRLNAVAAD FDDPEAIAKS IGPAAKVVVT VGLAEKGPEG GAITTDDALR VVQAADLASV
201: AHVVVVYDVD GASGLGGGGS TYNVLDGFTS FFSNLFSRVQ TLTLSQFLAK VVETDVRYTL LKASLTDDYT PENSYALLLA KEGVSPSITG KVSRSQIAAL
301: VADVFSNVAV AENKVVEVST SSSATTKSIT EAFIAMRPQH HRTSVPPCYW GWDRGTVEVE LVCFELGSGL LR

Best Arabidopsis Sequence Match ( AT3G46780.1 )
(BLAST)

001: MASSSTSFPL TTAPPQGVRF NRRKPRLTVW AKQTAFQLGK TKGDDDSEGK QKGKNPFQFD FGKLPDMKSL IPVVTNPSTG LVFGNNRKKD PGTIFVAGAT
101: GQAGIRIAQT LLQRGFSVRA GVPDLGAAQD LARVAATYKI LSNDEVKRLN AVQSPFQDAE SIAKAIGNAT KVVVTVGATE NGPDAQVSTS DALLVVQAAE
201: LAGVSHVAIV YDGTISGSTY NVLDGITSFF GNLFAKSQPL TISDLIEKVA QTDVAYTLIK TSLTEDFSPE KAYNVVVSAE GSNSGSGSSS SEAYKVPKLK
301: IASLVADIFA NTAVAENKVV EVSTDPSAPS RPVDELFSVI PEDGRRKVYA DAIARERAEE EAKVAADKAR EAAEAAKEFE KQMQKLSEKE AEAASLAEDA
401: QQKADAVGVT VDGLFNKAKD ISSGLSWNKL GSQFATAIQN ASETPKVQVA TVRGQAKARN LPPKKAVVKQ RPSSPFASKP KEERPKKPEK EVRKVFGGLF
501: KQETIYIDDD

Arabidopsis Description

PTAC16Protein plastid transcriptionally active 16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STF2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.