CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29743	Soybean	plastid	92.59	92.05
VIT_06s0004g05230.t01	Wine grape	plastid	69.2	68.8
Bra033802.1-P	Field mustard	plastid	62.77	63.01
CDX83004	Canola	plastid	62.57	62.82
AT3G46780.1	Thale cress	plastid	62.18	62.55
CDX68407	Canola	plastid	60.62	62.2
Solyc06g005710.2.1	Tomato	plastid	59.45	61.49
PGSC0003DMT400005492	Potato	plastid	59.06	61.21
GSMUA_Achr10P...	Banana	mitochondrion	58.87	57.63
Os05t0291700-02	Rice	plastid	52.63	54.55
TraesCS3A01G256400.2	Wheat	plastid	51.07	52.61
Zm00001d009877_P001	Maize	plastid	50.29	52.02
TraesCS3D01G256700.2	Wheat	plastid	50.49	52.01
TraesCS3B01G289600.2	Wheat	plastid	50.29	51.81
OQU77706	Sorghum	plastid	36.06	49.73
OQU77707	Sorghum	cytosol, mitochondrion, nucleus	13.65	42.17
HORVU3Hr1G065580.2	Barley	mitochondrion	18.13	40.26

Protein Annotations

EMBL:ACUP02007184	EnsemblPlants:KRH24736	EnsemblPlantsGene:GLYMA_12G059600	EntrezGene:100790239	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	ncoils:Coil	PANTHER:PTHR14194	PANTHER:PTHR14194:SF95	PFAM:PF13460	ProteinID:KRH24736
ProteinID:KRH24736.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI000233CB90	UniProt:I1LQL6	MapMan:15.6.1.2.3.6

Description

hypothetical protein

Coordinates

chr12:-:4307581..4311393

Molecular Weight (calculated)

55068.4 Da

IEP (calculated)

8.583

GRAVY (calculated)

-0.458

Length

513 amino acids

Sequence
(BLAST)

001: MAPTLTSNSS FITSTPHSRV TLRNPRLRVF AKKSGSFPSF GLGKPKDDSS SSTEEKDGSS NSNPFRLDFG KISLIPVPSN TSAPGFSFGN PRRKDPSTVF
101: VAGATGQAGI RIAQTLLREG FSVRAGVPEL ASAQELARLA AQYKIISNEQ AKRLNAVQSS FDNADTIAKA IGNASKVVVT IGPTENGPTT EVSASDALQV
201: VQAAQLAGVG HVAVIYDESS AGASTYNVLD GLSSFFSNLF SRSQPLTIQE FLQKVIETDV KYTFIKTSLT DDFSPESSYN VVVLGEGSDG ANDYKVAKSK
301: IASLVADVFS NTEVAENKVV KVYSDPGAPL KRVDELFSPI PEDGRRKAYA EMQEKAKAEE EARVAAEKAN EASESAKKLE EEVKKLLQQE ARAASLAQEA
401: QEKAEAAGAS VENLLNKAKD FGAGFSWEKL SSQITTSIQK PDEDEKPKVQ LATVRGQAKA RNLAPNKAVV RQTSQRSAGK PKVEKPKQAE TPKEVRNVFG
501: GLFKQETIYV DDD

Best Arabidopsis Sequence Match ( AT3G46780.1 )
(BLAST)

001: MASSSTSFPL TTAPPQGVRF NRRKPRLTVW AKQTAFQLGK TKGDDDSEGK QKGKNPFQFD FGKLPDMKSL IPVVTNPSTG LVFGNNRKKD PGTIFVAGAT
101: GQAGIRIAQT LLQRGFSVRA GVPDLGAAQD LARVAATYKI LSNDEVKRLN AVQSPFQDAE SIAKAIGNAT KVVVTVGATE NGPDAQVSTS DALLVVQAAE
201: LAGVSHVAIV YDGTISGSTY NVLDGITSFF GNLFAKSQPL TISDLIEKVA QTDVAYTLIK TSLTEDFSPE KAYNVVVSAE GSNSGSGSSS SEAYKVPKLK
301: IASLVADIFA NTAVAENKVV EVSTDPSAPS RPVDELFSVI PEDGRRKVYA DAIARERAEE EAKVAADKAR EAAEAAKEFE KQMQKLSEKE AEAASLAEDA
401: QQKADAVGVT VDGLFNKAKD ISSGLSWNKL GSQFATAIQN ASETPKVQVA TVRGQAKARN LPPKKAVVKQ RPSSPFASKP KEERPKKPEK EVRKVFGGLF
501: KQETIYIDDD

Arabidopsis Description

PTAC16Protein plastid transcriptionally active 16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STF2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.