Factsheet for GSMUA_Achr10P02410_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
nucleus 1
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24736	Soybean	nucleus, plastid	57.63	58.87
KRH29743	Soybean	plastid	57.82	58.72
VIT_06s0004g05230.t01	Wine grape	plastid	57.82	58.72
AT3G46780.1	Thale cress	plastid	56.87	58.43
Bra033802.1-P	Field mustard	plastid	56.87	58.32
CDX83004	Canola	plastid	56.68	58.12
CDX68407	Canola	plastid	55.15	57.8
Os05t0291700-02	Rice	plastid	52.67	55.76
TraesCS3A01G256400.2	Wheat	plastid	52.48	55.22
PGSC0003DMT400005492	Potato	plastid	52.1	55.15
TraesCS3D01G256700.2	Wheat	plastid	52.1	54.82
TraesCS3B01G289600.2	Wheat	plastid	52.1	54.82
Zm00001d009877_P001	Maize	plastid	51.53	54.44
Solyc06g005710.2.1	Tomato	plastid	51.15	54.03
OQU77706	Sorghum	plastid	37.4	52.69
HORVU3Hr1G065580.2	Barley	mitochondrion	19.85	45.02
OQU77707	Sorghum	cytosol, mitochondrion, nucleus	13.93	43.98

Protein Annotations

MapMan:15.6.1.2.3.6	Gene3D:3.40.50.720	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0007623	GO:GO:0008150	GO:GO:0009295	GO:GO:0009507	GO:GO:0009508
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009941	GO:GO:0016020
GO:GO:0042644	GO:GO:0098572	EnsemblPlantsGene:GSMUA_Achr10G02410_001	EnsemblPlants:GSMUA_Achr10P02410_001	EnsemblPlants:GSMUA_Achr10T02410_001	UniProt:M0RER8
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460	PANTHER:PTHR14194	PANTHER:PTHR14194:SF38	SUPFAM:SSF51735
UniParc:UPI000294FBCB	SEG:seg	:	:	:	:

Description

PTAC16, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G02410_001]

Coordinates

chr10:-:7128996..7132252

Molecular Weight (calculated)

55686.4 Da

IEP (calculated)

9.654

GRAVY (calculated)

-0.373

Length

524 amino acids

Sequence
(BLAST)

001: MAPALTSNSF RIAPGGGRRR LCSTREHKSL KTVTAQARQN PFSFGKPQGD ASSEEEAKGE GSANKANRFF IDFGKIPDAK SLVPVVTSPS TTLFASTRRK
101: DPRTVFVAGA TGQAGARISW ALLRQGFSVR AGVPDLPSAQ DLARVVSTYK IISPEESKRL NAVESSFSDA ESIAKAIGLA TKVVVTVGAA ENGPSAEVTT
201: DDALEVVRAA QLAGVGHVAV VYNSGPGGFS GQSTYNVLDG ISSFFSNLFA RSQPLTLGEF LSKVAELNVS YTLIKAAFTE DYSDESSYGL VVSEEGSTAG
301: TASEFKVSKS QIAKLVADVF SDTSIAENKV VEVSTSPSAT SKPTQELFGA IPEDGRRKAY AEAVAKAKAA EEAMRAAAKA TDAEEAAKKL EEEVKKLSEK
401: KARATSLNKE AQRRVVEAGS SLDSLFIKAK GLGNDFSWDK LSSQVTAAVS QINNNDTEDT EEKKARTQIA TVRGLAKARN LPSKKAVVKK PPQKPKPKQP
501: DPTPEVKNIF GGLFKQETIY IDDD

Best Arabidopsis Sequence Match ( AT3G46780.1 )
(BLAST)

001: MASSSTSFPL TTAPPQGVRF NRRKPRLTVW AKQTAFQLGK TKGDDDSEGK QKGKNPFQFD FGKLPDMKSL IPVVTNPSTG LVFGNNRKKD PGTIFVAGAT
101: GQAGIRIAQT LLQRGFSVRA GVPDLGAAQD LARVAATYKI LSNDEVKRLN AVQSPFQDAE SIAKAIGNAT KVVVTVGATE NGPDAQVSTS DALLVVQAAE
201: LAGVSHVAIV YDGTISGSTY NVLDGITSFF GNLFAKSQPL TISDLIEKVA QTDVAYTLIK TSLTEDFSPE KAYNVVVSAE GSNSGSGSSS SEAYKVPKLK
301: IASLVADIFA NTAVAENKVV EVSTDPSAPS RPVDELFSVI PEDGRRKVYA DAIARERAEE EAKVAADKAR EAAEAAKEFE KQMQKLSEKE AEAASLAEDA
401: QQKADAVGVT VDGLFNKAKD ISSGLSWNKL GSQFATAIQN ASETPKVQVA TVRGQAKARN LPPKKAVVKQ RPSSPFASKP KEERPKKPEK EVRKVFGGLF
501: KQETIYIDDD

Arabidopsis Description

PTAC16Protein plastid transcriptionally active 16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STF2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.