Factsheet for Zm00001d009877_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010048_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46780.1	Zm00001d010048_P004	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77706	Sorghum	plastid	58.47	77.96
Os05t0291700-02	Rice	plastid	69.56	69.7
TraesCS3A01G256400.2	Wheat	plastid	69.15	68.88
TraesCS3B01G289600.2	Wheat	plastid	68.75	68.47
TraesCS3D01G256700.2	Wheat	plastid	68.55	68.27
GSMUA_Achr10P...	Banana	mitochondrion	54.44	51.53
HORVU3Hr1G065580.2	Barley	mitochondrion	23.59	50.65
KRH24736	Soybean	nucleus, plastid	52.02	50.29
KRH29743	Soybean	plastid	51.81	49.81
VIT_06s0004g05230.t01	Wine grape	plastid	50.6	48.64
PGSC0003DMT400005492	Potato	plastid	48.39	48.48
Solyc06g005710.2.1	Tomato	plastid	47.98	47.98
CDX68407	Canola	plastid	48.19	47.8
Bra033802.1-P	Field mustard	plastid	47.78	46.38
CDX83004	Canola	plastid	47.78	46.38
AT3G46780.1	Thale cress	plastid	47.58	46.27

Protein Annotations

EntrezGene:100383193	MapMan:15.6.1.2.3.6	Gene3D:3.40.50.720	ProteinID:AQK92901.1	EMBL:BT066531	UniProt:C0PE12
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0007623
GO:GO:0008150	GO:GO:0009295	GO:GO:0009507	GO:GO:0009508	GO:GO:0009534	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009941	GO:GO:0016020	GO:GO:0042644	GO:GO:0098572
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460	PANTHER:PTHR14194	PANTHER:PTHR14194:SF38	SUPFAM:SSF51735
UniParc:UPI000195C97E	EnsemblPlantsGene:Zm00001d009877	EnsemblPlants:Zm00001d009877_P001	EnsemblPlants:Zm00001d009877_T001	SEG:seg	:

Description

Protein plastid transcriptionally active 16 chloroplastic

Coordinates

chr8:+:86773769..86776719

Molecular Weight (calculated)

51854.8 Da

IEP (calculated)

8.794

GRAVY (calculated)

-0.240

Length

496 amino acids

Sequence
(BLAST)

001: MAPALTSNPP SFRPLTSPLR RRAATVPCRV GKPGKDSSAA DDATGPNKRP NLFADFGNAK SLIQAFPSQS LFAGGGRGRK DPQTVFVAGA TGQAGVRIAQ
101: TLLRQGFAVR AGVPDLASAQ ELARLAAAYR LISPAEARRL NAVEAGFGDP DAIAKSIGPA AKVVVTVGSA EKGPEGGGVT TDDALRVVRA ADLASVAHVV
201: VVYDEGAASG GLGGGGSTYN VLDGFTSFFS NLFSREQQAL TLSQFLAKVA ETDVRYTLVK ASLTDDYTPE SYYAQLVLTK EGVSPSDTGK VSRSQIAALV
301: ADVFSNVAVA ENKVVEVSTS SSATAKNIAE AFTAIPEDRR RTEYLEAAAK AQAEEETLAS ERANKKAEAA ASKSEADTKT TPSEEAAATP SAVNGAQASL
401: ENLLSRAKVI SADFSWEKFS TQFADVTTPL TSSLEKEPNK AQIATVRGQE KAKKLAPRIA VVKPAAQKAK QPDPKPEVRA LFGGLFKQET VYVDDD

Best Arabidopsis Sequence Match ( AT3G46780.1 )
(BLAST)

001: MASSSTSFPL TTAPPQGVRF NRRKPRLTVW AKQTAFQLGK TKGDDDSEGK QKGKNPFQFD FGKLPDMKSL IPVVTNPSTG LVFGNNRKKD PGTIFVAGAT
101: GQAGIRIAQT LLQRGFSVRA GVPDLGAAQD LARVAATYKI LSNDEVKRLN AVQSPFQDAE SIAKAIGNAT KVVVTVGATE NGPDAQVSTS DALLVVQAAE
201: LAGVSHVAIV YDGTISGSTY NVLDGITSFF GNLFAKSQPL TISDLIEKVA QTDVAYTLIK TSLTEDFSPE KAYNVVVSAE GSNSGSGSSS SEAYKVPKLK
301: IASLVADIFA NTAVAENKVV EVSTDPSAPS RPVDELFSVI PEDGRRKVYA DAIARERAEE EAKVAADKAR EAAEAAKEFE KQMQKLSEKE AEAASLAEDA
401: QQKADAVGVT VDGLFNKAKD ISSGLSWNKL GSQFATAIQN ASETPKVQVA TVRGQAKARN LPPKKAVVKQ RPSSPFASKP KEERPKKPEK EVRKVFGGLF
501: KQETIYIDDD

Arabidopsis Description

PTAC16Protein plastid transcriptionally active 16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STF2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.