Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- golgi 3
- plasma membrane 5
- endoplasmic reticulum 3
- vacuole 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G221900.1 | Wheat | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 75.66 | 84.03 |
| TraesCS1D01G223600.2 | Wheat | nucleus | 69.69 | 80.56 |
| TraesCS1B01G235100.2 | Wheat | nucleus | 69.03 | 80.41 |
| HORVU6Hr1G050500.2 | Barley | nucleus | 52.21 | 78.67 |
| HORVU6Hr1G050520.2 | Barley | nucleus | 40.71 | 77.64 |
| KXG21735 | Sorghum | nucleus | 38.5 | 51.79 |
| Zm00001d010048_P004 | Maize | nucleus | 42.04 | 51.77 |
| CDY36289 | Canola | nucleus | 23.89 | 37.11 |
| CDY67039 | Canola | nucleus | 23.89 | 36.99 |
| HORVU2Hr1G111510.1 | Barley | nucleus | 15.71 | 36.79 |
| Bra034159.1-P | Field mustard | nucleus | 23.45 | 36.55 |
| CDY08557 | Canola | nucleus | 24.56 | 35.35 |
| Bra029889.1-P | Field mustard | nucleus | 24.56 | 35.35 |
| CDY00987 | Canola | nucleus | 24.11 | 35.05 |
| Bra028759.1-P | Field mustard | nucleus | 22.79 | 33.77 |
| CDY52149 | Canola | nucleus | 23.89 | 32.93 |
| Bra005852.1-P | Field mustard | nucleus | 23.45 | 32.32 |
| CDY04950 | Canola | nucleus | 23.01 | 32.1 |
| HORVU1Hr1G063100.1 | Barley | nucleus | 17.48 | 31.85 |
| AT5G05410.1 | Thale cress | nucleus | 23.23 | 31.34 |
| CDX70151 | Canola | nucleus | 22.79 | 31.21 |
| Bra009112.1-P | Field mustard | nucleus | 22.79 | 31.21 |
| CDX98843 | Canola | nucleus | 23.01 | 31.14 |
| AT3G11020.1 | Thale cress | nucleus | 21.9 | 30.0 |
| CDX73896 | Canola | nucleus | 22.79 | 26.96 |
| Bra001386.1-P | Field mustard | nucleus | 22.57 | 26.56 |
| HORVU1Hr1G060060.1 | Barley | nucleus, plastid | 12.39 | 18.24 |
| HORVU1Hr1G070410.1 | Barley | nucleus | 15.04 | 17.57 |
| CDY00719 | Canola | nucleus | 5.31 | 10.13 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | UniProt:A0A287FUM8 | ProteinID:AEI54688.1 | ProteinID:AEI54689.1 | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:HORVU1Hr1G060490 | EnsemblPlants:HORVU1Hr1G060490.5 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31241 | PANTHER:PTHR31241:SF16 | SMART:SM00380 |
| SUPFAM:SSF54171 | TMHMM:TMhelix | UniParc:UPI000B478997 | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr1H:-:439177246..439179945
Molecular Weight (calculated)
49445.4 Da
IEP (calculated)
4.485
GRAVY (calculated)
-0.257
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFLSVLLVY PVLDMSCLSV LLLYPVSAIS CLSVLLIYVV PMSCLSVLLV YPVSDMSCPV CLFFSVTRTC GAEESTRSHV LVEPIGSSDL LCNEYALLAQ
101: QNPKGDALPV ASILRKKRPR RSRDGPNSVS ETIKRWKEVN QQLEHDPQGA KRARKPPAKG SKKGCMQGKG GPENTQCGFR GVRQRTWGKW VAEIREPNRV
201: SRLWLGTFPT AEVAAQAYDE AARAMYGPLA RTNFPVQDAQ AAPAVAVPVA TEGVVRGSSA SCESTTTSNH SDVASSSHNK QLQIQAPEIS SRSDLLESTQ
301: SVEYSQQQSV PDAVSSIAMS TSEEDVYEPL EPISNLPDGE ADCFDIEELL KLIEADPVEV DPVTVGSWNE FQDAGANARG SWNEFQCGVS WNANAGMEMG
401: QQEPLYLDGL DQGMLEGMLH SDYPFPVWIS EDRPMHNPAF HDAEMSEFFE GL
101: QNPKGDALPV ASILRKKRPR RSRDGPNSVS ETIKRWKEVN QQLEHDPQGA KRARKPPAKG SKKGCMQGKG GPENTQCGFR GVRQRTWGKW VAEIREPNRV
201: SRLWLGTFPT AEVAAQAYDE AARAMYGPLA RTNFPVQDAQ AAPAVAVPVA TEGVVRGSSA SCESTTTSNH SDVASSSHNK QLQIQAPEIS SRSDLLESTQ
301: SVEYSQQQSV PDAVSSIAMS TSEEDVYEPL EPISNLPDGE ADCFDIEELL KLIEADPVEV DPVTVGSWNE FQDAGANARG SWNEFQCGVS WNANAGMEMG
401: QQEPLYLDGL DQGMLEGMLH SDYPFPVWIS EDRPMHNPAF HDAEMSEFFE GL
001: MAVYDQSGDR NRTQIDTSRK RKSRSRGDGT TVAERLKRWK EYNETVEEVS TKKRKVPAKG SKKGCMKGKG GPENSRCSFR GVRQRIWGKW VAEIREPNRG
101: SRLWLGTFPT AQEAASAYDE AAKAMYGPLA RLNFPRSDAS EVTSTSSQSE VCTVETPGCV HVKTEDPDCE SKPFSGGVEP MYCLENGAEE MKRGVKADKH
201: WLSEFEHNYW SDILKEKEKQ KEQGIVETCQ QQQQDSLSVA DYGWPNDVDQ SHLDSSDMFD VDELLRDLNG DDVFAGLNQD RYPGNSVANG SYRPESQQSG
301: FDPLQSLNYG IPPFQLEGKD GNGFFDDLSY LDLEN
101: SRLWLGTFPT AQEAASAYDE AAKAMYGPLA RLNFPRSDAS EVTSTSSQSE VCTVETPGCV HVKTEDPDCE SKPFSGGVEP MYCLENGAEE MKRGVKADKH
201: WLSEFEHNYW SDILKEKEKQ KEQGIVETCQ QQQQDSLSVA DYGWPNDVDQ SHLDSSDMFD VDELLRDLNG DDVFAGLNQD RYPGNSVANG SYRPESQQSG
301: FDPLQSLNYG IPPFQLEGKD GNGFFDDLSY LDLEN
Arabidopsis Description
DREB2ADehydration-responsive element-binding protein 2A [Source:UniProtKB/Swiss-Prot;Acc:O82132]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.