Factsheet for Bra029889.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009822.1-P
Bra018280.1-P
Bra020486.1-P
Bra023252.1-P
Bra035511.1-P
Bra036535.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11020.1	Bra023252.1-P	AT1G32230.1	19548978
AT3G11020.1	Bra035511.1-P	AT1G32230.1	19548978
AT3G11020.1	Bra018280.1-P	AT2G31070.1	21245844
AT3G11020.1	Bra009822.1-P	AT5G25160.1	21245844
AT3G11020.1	Bra020486.1-P	AT5G25160.1	21245844
AT3G11020.1	Bra036535.1-P	AT5G25160.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08557	Canola	nucleus	96.5	96.5
CDY00987	Canola	nucleus	92.04	92.93
Bra034159.1-P	Field mustard	nucleus	66.24	71.72
AT3G11020.1	Thale cress	nucleus	63.06	60.0
Bra001386.1-P	Field mustard	nucleus	63.38	51.82
Bra028759.1-P	Field mustard	nucleus	50.32	51.8
Bra009112.1-P	Field mustard	nucleus	50.64	48.18
Bra005852.1-P	Field mustard	nucleus	50.0	47.87
Bra005113.1-P	Field mustard	nucleus	25.16	31.98
HORVU6Hr1G050500.2	Barley	nucleus	30.25	31.67
Bra003752.1-P	Field mustard	nucleus	19.75	30.39
HORVU6Hr1G050520.2	Barley	nucleus	22.93	30.38
Bra008200.1-P	Field mustard	nucleus	19.11	30.3
Bra017011.1-P	Field mustard	nucleus	32.17	30.06
Bra015840.1-P	Field mustard	nucleus, plastid	19.43	29.61
KXG21735	Sorghum	nucleus	30.25	28.27
TraesCS1D01G223600.2	Wheat	nucleus	34.71	27.88
TraesCS1B01G235100.2	Wheat	nucleus	34.08	27.58
Zm00001d010048_P004	Maize	nucleus	31.21	26.7
Bra007341.1-P	Field mustard	nucleus	22.61	26.3
TraesCS1A01G221900.1	Wheat	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	34.08	26.29
Bra023674.1-P	Field mustard	nucleus	23.25	25.35
Bra006460.1-P	Field mustard	nucleus	22.93	24.74
Bra014617.1-P	Field mustard	nucleus	20.38	24.71
HORVU1Hr1G060490.5	Barley	plasma membrane	35.35	24.56
Bra002159.1-P	Field mustard	nucleus	22.93	23.53
Bra004978.1-P	Field mustard	nucleus	19.11	18.93
Bra000178.1-P	Field mustard	nucleus	18.15	16.96

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra029889	EnsemblPlants:Bra029889.1
EnsemblPlants:Bra029889.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4EM69	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31241	PANTHER:PTHR31241:SF2	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002547756	SEG:seg

Description

AT3G11020 (E=1e-041) DREB2B, DREB2 | DREB2B (DRE/CRT-BINDING PROTEIN 2B); DNA binding / transcription activator/ transcription factor

Coordinates

chrA05:-:21850766..21851710

Molecular Weight (calculated)

35369.0 Da

IEP (calculated)

5.173

GRAVY (calculated)

-0.882

Length

314 amino acids

Sequence
(BLAST)

001: MAVYDQTGTH TVSISRKRKS RARADGTTVA DRLKKWKEYN DSVNASSIKQ GEKPKRKPPA KGSKKGCMKG KGGPENSHSS FRGVRQRVWG KWVAEIREPN
101: KVSRLWLGTF PTAEEAASAY DEAAMAMYGP LARLNFPQQC VGSESLTSTS SQSEVCRDEN KAVLDVKQED VDCKTRPVSE IKYVKEVCGD HAYTRLNEFD
201: EEYWSRLSNG VEKPKEEEVI QPQQELDMLT VADYGWLSDM QNEQGFWDPD DSFDIDELLR DIDVGLLTGH DPSQNQSQVV HPGGYDSHPL QMEPQDNNHE
301: LFNLSSLDGS LTKF

Best Arabidopsis Sequence Match ( AT3G11020.1 )
(BLAST)

001: MAVYEQTGTE QPKKRKSRAR AGGLTVADRL KKWKEYNEIV EASAVKEGEK PKRKVPAKGS KKGCMKGKGG PDNSHCSFRG VRQRIWGKWV AEIREPKIGT
101: RLWLGTFPTA EKAASAYDEA ATAMYGSLAR LNFPQSVGSE FTSTSSQSEV CTVENKAVVC GDVCVKHEDT DCESNPFSQI LDVREESCGT RPDSCTVGHQ
201: DMNSSLNYDL LLEFEQQYWG QVLQEKEKPK QEEEEIQQQQ QEQQQQQLQP DLLTVADYGW PWSNDIVNDQ TSWDPNECFD INELLGDLNE PGPHQSQDQN
301: HVNSGSYDLH PLHLEPHDGH EFNGLSSLDI

Arabidopsis Description

DREB2BDehydration-responsive element-binding protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O82133]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.