Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88955 | Canola | nucleus | 98.84 | 98.46 |
| CDY52095 | Canola | nucleus | 90.73 | 88.35 |
| Solyc10g080310.1.1 | Tomato | nucleus | 23.55 | 83.56 |
| Bra007341.1-P | Field mustard | nucleus | 85.71 | 82.22 |
| CDY33814 | Canola | nucleus | 25.1 | 74.71 |
| AT3G57600.1 | Thale cress | nucleus | 78.76 | 73.65 |
| Zm00001d043409_P001 | Maize | nucleus | 26.64 | 55.2 |
| KRG95297 | Soybean | nucleus | 59.07 | 54.26 |
| VIT_08s0007g08150.t01 | Wine grape | nucleus | 59.85 | 54.01 |
| KRH66977 | Soybean | nucleus | 56.37 | 51.41 |
| KRG93709 | Soybean | nucleus | 47.49 | 51.25 |
| KRH16554 | Soybean | nucleus | 50.19 | 50.19 |
| KRG93713 | Soybean | nucleus | 52.9 | 50.18 |
| KRH71963 | Soybean | nucleus | 55.6 | 46.6 |
| KRH33104 | Soybean | nucleus | 55.21 | 44.83 |
| PGSC0003DMT400060970 | Potato | nucleus | 51.35 | 42.49 |
| GSMUA_Achr3P29800_001 | Banana | mitochondrion | 26.25 | 36.17 |
| KXG40072 | Sorghum | nucleus | 42.86 | 35.13 |
| Zm00001d048296_P001 | Maize | nucleus | 41.31 | 34.85 |
| Os03t0174400-00 | Rice | nucleus | 42.47 | 34.59 |
| TraesCS4B01G290100.1 | Wheat | nucleus | 41.7 | 34.29 |
| TraesCS4D01G289200.1 | Wheat | nucleus | 42.08 | 34.17 |
| TraesCS4A01G013600.1 | Wheat | nucleus | 42.08 | 34.06 |
| Zm00001d027870_P001 | Maize | nucleus | 42.08 | 33.96 |
| Zm00001d048297_P001 | Maize | nucleus | 39.77 | 31.99 |
| Bra008200.1-P | Field mustard | nucleus | 23.55 | 30.81 |
| GSMUA_Achr7P27150_001 | Banana | nucleus | 29.34 | 29.23 |
| Bra003752.1-P | Field mustard | nucleus | 22.78 | 28.92 |
| Bra015840.1-P | Field mustard | nucleus, plastid | 22.01 | 27.67 |
| Bra005113.1-P | Field mustard | nucleus | 23.94 | 25.1 |
| Bra023674.1-P | Field mustard | nucleus | 27.03 | 24.31 |
| Bra006460.1-P | Field mustard | nucleus | 26.25 | 23.37 |
| Bra002159.1-P | Field mustard | nucleus | 26.64 | 22.55 |
| Bra028759.1-P | Field mustard | nucleus | 26.25 | 22.3 |
| Bra034159.1-P | Field mustard | nucleus | 24.32 | 21.72 |
| Bra029889.1-P | Field mustard | nucleus | 24.71 | 20.38 |
| Bra005852.1-P | Field mustard | nucleus | 25.48 | 20.12 |
| Bra004978.1-P | Field mustard | nucleus | 23.17 | 18.93 |
| Bra009112.1-P | Field mustard | nucleus | 23.94 | 18.79 |
| Bra000178.1-P | Field mustard | nucleus | 24.32 | 18.75 |
| Bra017011.1-P | Field mustard | nucleus | 23.94 | 18.45 |
| Bra001386.1-P | Field mustard | nucleus | 25.87 | 17.45 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlantsGene:Bra014617 | EnsemblPlants:Bra014617.1 |
| EnsemblPlants:Bra014617.1-P | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M4DDP9 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31241 | PANTHER:PTHR31241:SF3 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI00025443B6 | SEG:seg |
Description
AT3G57600 (E=3e-064) | AP2 domain-containing transcription factor, putative
Coordinates
chrA04:-:1780921..1781700
Molecular Weight (calculated)
29374.6 Da
IEP (calculated)
7.554
GRAVY (calculated)
-0.754
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKPSSMKQW KKGPARGKGG PQNALCRYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA EEAAMAYDKA ALKLFGHDAY LNLPHLQRKQ GPSVNNTQRF
101: KWVPSKKFIS MFPSRGLLNV NAQPSLHIIQ QRLDELKRNG LLSQSYSSSP SSASFLDEQK KPEMDLNEFL QQMGILKDKS QAEASEVAVS HYTPPWKEQE
201: ESGGPFTDQS LSWETMIDEM PGSETSAMHF DCSNFGSYDD LEDDLGFPSI WNFCGSLDE
101: KWVPSKKFIS MFPSRGLLNV NAQPSLHIIQ QRLDELKRNG LLSQSYSSSP SSASFLDEQK KPEMDLNEFL QQMGILKDKS QAEASEVAVS HYTPPWKEQE
201: ESGGPFTDQS LSWETMIDEM PGSETSAMHF DCSNFGSYDD LEDDLGFPSI WNFCGSLDE
001: MEKSSSMKQW KKGPARGKGG PQNALCQYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA EEAAMAYDEA ALKLYGHDAY LNLPHLQRNT RPSLSNSQRF
101: KWVPSRKFIS MFPSCGMLNV NAQPSVHIIQ QRLEELKKTG LLSQSYSSSS SSTESKTNTS FLDEKTSKGE TDNMFEGGDQ KKPEIDLTEF LQQLGILKDE
201: NEAEPSEVAE CHSPPPWNEQ EETGSPFRTE NFSWDTLIEM PRSETTTMQF DSSNFGSYDF EDDVSFPSIW DYYGSLD
101: KWVPSRKFIS MFPSCGMLNV NAQPSVHIIQ QRLEELKKTG LLSQSYSSSS SSTESKTNTS FLDEKTSKGE TDNMFEGGDQ KKPEIDLTEF LQQLGILKDE
201: NEAEPSEVAE CHSPPPWNEQ EETGSPFRTE NFSWDTLIEM PRSETTTMQF DSSNFGSYDF EDDVSFPSIW DYYGSLD
Arabidopsis Description
DREB2FDehydration-responsive element-binding protein 2F [Source:UniProtKB/Swiss-Prot;Acc:Q9SVX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.