Factsheet for Bra005113.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54455	Canola	nucleus	96.76	96.76
AT2G38340.1	Thale cress	nucleus	66.4	67.21
Bra008200.1-P	Field mustard	nucleus	25.1	31.31
Bra003752.1-P	Field mustard	nucleus	25.51	30.88
Bra015840.1-P	Field mustard	nucleus, plastid	24.29	29.13
Bra034159.1-P	Field mustard	nucleus	31.17	26.55
Bra029889.1-P	Field mustard	nucleus	31.98	25.16
Bra028759.1-P	Field mustard	nucleus	30.77	24.92
Bra023674.1-P	Field mustard	nucleus	27.94	23.96
EES18376	Sorghum	mitochondrion	23.08	23.95
Bra014617.1-P	Field mustard	nucleus	25.1	23.94
Bra006460.1-P	Field mustard	nucleus	27.94	23.71
Bra005852.1-P	Field mustard	nucleus	31.17	23.48
KRH49463	Soybean	nucleus	33.2	23.3
Bra007341.1-P	Field mustard	nucleus	25.1	22.96
Bra017011.1-P	Field mustard	nucleus	31.17	22.92
Bra002159.1-P	Field mustard	nucleus	27.53	22.22
Bra009112.1-P	Field mustard	nucleus	29.55	22.12
Zm00001d038446_P001	Maize	vacuole	24.7	21.86
Bra001386.1-P	Field mustard	nucleus	32.39	20.83
Os05t0473300-01	Rice	nucleus	21.46	20.31
Solyc10g076370.1.1	Tomato	nucleus	32.79	20.0
Solyc10g076380.1.1	Tomato	nucleus	25.51	19.5
Bra004978.1-P	Field mustard	nucleus	24.7	19.24
PGSC0003DMT400041064	Potato	nucleus	33.6	18.16
Bra000178.1-P	Field mustard	nucleus	23.08	16.96
TraesCS1B01G307000.1	Wheat	nucleus	25.51	16.36
HORVU1Hr1G070410.1	Barley	nucleus	25.1	16.02
KRH00328	Soybean	nucleus	32.79	15.37
PGSC0003DMT400041065	Potato	nucleus	26.32	14.84

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra005113	EnsemblPlants:Bra005113.1
EnsemblPlants:Bra005113.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009414	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0034605	GO:GO:0043565
GO:GO:0044212	GO:GO:0045893	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CLM6	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF2	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI00025476BA	SEG:seg	:	:	:	:

Description

AT2G38340 (E=1e-067) | AP2 domain-containing transcription factor, putative (DRE2B)

Coordinates

chrA05:+:3486952..3487695

Molecular Weight (calculated)

28147.5 Da

IEP (calculated)

4.952

GRAVY (calculated)

-1.036

Length

247 amino acids

Sequence
(BLAST)

001: MEKEDNGPNQ SSSASIEPSR RRRRAAEPVD TTLSRWVKEE EEEEGLKRTR RVQAKGSRKG CMRGKGGPEN PVCRFRGVRQ RVWGKWVAEI REPVNQRGGN
101: SKRLWLGTFD TAADAALAYD RAASAMYGRY ARLNFPDGLG NGQDDEMKKT DEAESSRSYW LETCNVSETG NSVVVDKKDG EDYLYEDCIE LGQDKIEKLG
201: RMADNEIVKS EEDYMFDGFE LDNGLLYNES GHYHGGGFEP YLEHFRF

Best Arabidopsis Sequence Match ( AT2G38340.1 )
(BLAST)

001: MEKEDNGSKQ SSSASVVSSR RRRRVVEPVE ATLQRWEEEG LARARRVQAK GSKKGCMRGK GGPENPVCRF RGVRQRVWGK WVAEIREPVS HRGANSSRSK
101: RLWLGTFATA AEAALAYDRA ASVMYGPYAR LNFPEDLGGG RKKDEEAESS GGYWLETNKA GNGVIETEGG KDYVVYNEDA IELGHDKTQN PMTDNEIVNP
201: AVKSEEGYSY DRFKLDNGLL YNEPQSSSYH QGGGFDSYFE YFRF

Arabidopsis Description

DREB2EDehydration-responsive element-binding protein 2E [Source:UniProtKB/Swiss-Prot;Acc:O80917]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.