Factsheet for Solyc10g076380.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g080310.1.1	Tomato	nucleus	13.31	58.9
Solyc10g076370.1.1	Tomato	nucleus	66.56	53.09
Solyc04g050750.1.1	Tomato	nucleus	17.65	35.4
AT2G38340.1	Thale cress	nucleus	19.81	26.23
CDY71905	Canola	nucleus	19.5	25.82
Bra005113.1-P	Field mustard	nucleus	19.5	25.51
CDY54455	Canola	nucleus	19.2	25.1
Solyc06g050520.1.1	Tomato	nucleus	20.74	22.33
CDY61527	Canola	nucleus	19.81	21.77
EES18376	Sorghum	mitochondrion	15.17	20.59
Solyc04g080910.1.1	Tomato	nucleus	15.79	20.56
Solyc05g052410.1.1	Tomato	nucleus	25.08	20.3
Os05t0473300-01	Rice	nucleus	15.48	19.16
KRH49463	Soybean	nucleus	19.81	18.18
Zm00001d038446_P001	Maize	vacuole	15.48	17.92
HORVU1Hr1G070410.1	Barley	nucleus	16.41	13.7
TraesCS1B01G307000.1	Wheat	nucleus	15.79	13.25
KRH00328	Soybean	nucleus	21.05	12.9

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0044212	GO:GO:0045893
InterPro:IPR001471	InterPro:IPR036955	UniProt:K4D1Y0	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31241	PANTHER:PTHR31241:SF17	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc10g076380.1	EnsemblPlants:Solyc10g076380.1.1
UniParc:UPI0002769D83	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:59344797..59345814

Molecular Weight (calculated)

36431.1 Da

IEP (calculated)

3.848

GRAVY (calculated)

-0.736

Length

323 amino acids

Sequence
(BLAST)

001: MQGKGGPENS SCKYRGVRQR TWGKWVAEIR EPAYISGDNK SKGKRLWLGS FDSADEAAIA YDEAAKVMYG SNATLNFPNY SSNGSITRTS SLELSGQSCV
101: DHEDLVLDGS KNDEIESDLK TSDTPNTDLS YDYVNHGSPA CSWNEEDLEV IMEENSKNEL IDSEFETPLT KEDEFVQCLN FNDVSNTKNV NEDVGARLEY
201: MEHCVMDDNC SMEATNVLDT FCLTENHDEA FDFQRFLEES FDFKLNYAEQ FDCTYAYNQQ IDLQNSETDS EIRSDGIWKE QNLGGFGLDN FGASNSTQPE
301: DNIEDLSMFS SDFDVSSFLN DII

Best Arabidopsis Sequence Match ( AT2G38340.1 )
(BLAST)

001: MEKEDNGSKQ SSSASVVSSR RRRRVVEPVE ATLQRWEEEG LARARRVQAK GSKKGCMRGK GGPENPVCRF RGVRQRVWGK WVAEIREPVS HRGANSSRSK
101: RLWLGTFATA AEAALAYDRA ASVMYGPYAR LNFPEDLGGG RKKDEEAESS GGYWLETNKA GNGVIETEGG KDYVVYNEDA IELGHDKTQN PMTDNEIVNP
201: AVKSEEGYSY DRFKLDNGLL YNEPQSSSYH QGGGFDSYFE YFRF

Arabidopsis Description

DREB2EDehydration-responsive element-binding protein 2E [Source:UniProtKB/Swiss-Prot;Acc:O80917]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.