CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038446_P001	Maize	vacuole	65.13	55.56
Os05t0473300-01	Rice	nucleus	41.6	37.93
TraesCS1B01G307000.1	Wheat	nucleus	41.6	25.71
AT2G38340.1	Thale cress	nucleus	25.21	24.59
KXG21759	Sorghum	nucleus	26.47	24.51
CDY54455	Canola	nucleus	24.37	23.48
CDY71905	Canola	nucleus	23.95	23.36
Bra005113.1-P	Field mustard	nucleus	23.95	23.08
HORVU1Hr1G070410.1	Barley	nucleus	36.97	22.74
EES02409	Sorghum	nucleus	22.27	20.23
KXG21735	Sorghum	nucleus	27.31	19.35
CDY61527	Canola	nucleus	23.53	19.05
KXG40072	Sorghum	nucleus	23.53	17.72
EER92302	Sorghum	nucleus	25.63	17.38
KRH49463	Soybean	nucleus	23.95	16.19
Solyc10g076380.1.1	Tomato	nucleus	20.59	15.17
OQU80673	Sorghum	nucleus	24.37	14.95
Solyc10g076370.1.1	Tomato	nucleus	21.85	12.84
KRH00328	Soybean	nucleus	25.21	11.39
PGSC0003DMT400041064	Potato	nucleus	21.85	11.38
PGSC0003DMT400041065	Potato	nucleus	17.23	9.36

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	EntrezGene:8061805	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:C5YZQ0
InterPro:DNA-bd_dom_sf	EnsemblPlants:EES18376	ProteinID:EES18376	ProteinID:EES18376.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0044212	GO:GO:0045893	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF17
SMART:SM00380	EnsemblPlantsGene:SORBI_3009G170800	SUPFAM:SSF54171	UniParc:UPI0001A8896A	RefSeq:XP_002439946.1	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:52648634..52650986

Molecular Weight (calculated)

25427.5 Da

IEP (calculated)

7.363

GRAVY (calculated)

-0.426

Length

238 amino acids

Sequence
(BLAST)

001: MGVGLKRQEM WRAAAAAAAA APAPTASAAG RQQAVASNSA TAKPLAERFR PAQRGMGGPD NACHNFRGVR QRRWGKWVAE IREPNRGKRH WLGTFDNPFD
101: AAVAYDRAAV SIHGAHYAHL NFPADHAAAA PAQCHPSSCS AAATTADVFQ EHEAKPRVAA ALGGGAVTVS QQQPQQQGTP WISPDAPFGD DSHDIAMYLD
201: FDAVSDMVPF YPGIKREDCQ HQVFDANAVH SPVWALGD

Best Arabidopsis Sequence Match ( AT1G75490.1 )
(BLAST)

001: MSSIEPKVMM VGANKKQRTV QASSRKGCMR GKGGPDNASC TYKGVRQRTW GKWVAEIREP NRGARLWLGT FDTSREAALA YDSAARKLYG PEAHLNLPES
101: LRSYPKTASS PASQTTPSSN TGGKSSSDSE SPCSSNEMSS CGRVTEEISW EHINVDLPVM DDSSIWEEAT MSLGFPWVHE GDNDISRFDT CISGGYSNWD
201: SFHSPL

Arabidopsis Description

DREB2DDehydration-responsive element-binding protein 2D [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.