Factsheet for TraesCS1B01G307000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G070410.1	Barley	nucleus	59.22	58.91
Os05t0473300-01	Rice	nucleus	28.31	41.76
EES18376	Sorghum	mitochondrion	25.71	41.6
Zm00001d038446_P001	Maize	vacuole	24.16	33.33
TraesCS2B01G529200.1	Wheat	plastid	13.25	26.42
CDY54455	Canola	nucleus	16.62	25.91
CDY71905	Canola	nucleus	16.36	25.82
Bra005113.1-P	Field mustard	nucleus	16.36	25.51
TraesCS1B01G256000.1	Wheat	nucleus	14.81	24.78
AT2G38340.1	Thale cress	nucleus	15.58	24.59
TraesCS1B01G236700.1	Wheat	nucleus	14.81	22.27
CDY61527	Canola	nucleus	16.1	21.09
TraesCS4B01G290100.1	Wheat	nucleus	15.58	19.05
TraesCS1B01G235100.2	Wheat	nucleus	18.7	18.56
KRH49463	Soybean	nucleus	15.84	17.33
Solyc10g076380.1.1	Tomato	nucleus	13.25	15.79
Solyc10g076370.1.1	Tomato	nucleus	15.58	14.81
PGSC0003DMT400041064	Potato	nucleus	16.88	14.22
KRH00328	Soybean	nucleus	16.62	12.14
PGSC0003DMT400041065	Potato	nucleus	12.47	10.96

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.2	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF17	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS1B01G307000	EnsemblPlants:TraesCS1B01G307000.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr1B:+:530045489..530048165

Molecular Weight (calculated)

42117.0 Da

IEP (calculated)

5.821

GRAVY (calculated)

-0.257

Length

385 amino acids

Sequence
(BLAST)

001: MPVEGAVGIK GEEMEQASAT TPTTSTIRTK RARPKSSATL RIKTPVASPP GGEGGPEDRD HMYRGVRQRR WGRWVSEVRE PNRGKRHWLG TFDTAVDAAL
101: AYDRAAVAIY GSRAIVNFPS AFFISTAQPV QCHSPSSSPA TAASVLTEHG VKPMMAAASI LDEHEIKPVI TASVSDEREV KPMVAASVFG EREVKPMVAA
201: SVFHEREVKP MVPASVFGER EVKPVVAASV FGEREVKPMV AASVFHEREV KPMVPASVFG EREVRPMVAA SVSGEREVKP MVAASVFGER EVKPMVAASV
301: FGEHEVKPTP VHGVGDDTWI AQHWDASWAE REEVYADYLK DIAMYIDVDA ITEKLVYHPG IYGKDYQVDG FDAEFTVSPL WELGD

Best Arabidopsis Sequence Match ( AT1G75490.1 )
(BLAST)

001: MSSIEPKVMM VGANKKQRTV QASSRKGCMR GKGGPDNASC TYKGVRQRTW GKWVAEIREP NRGARLWLGT FDTSREAALA YDSAARKLYG PEAHLNLPES
101: LRSYPKTASS PASQTTPSSN TGGKSSSDSE SPCSSNEMSS CGRVTEEISW EHINVDLPVM DDSSIWEEAT MSLGFPWVHE GDNDISRFDT CISGGYSNWD
201: SFHSPL

Arabidopsis Description

DREB2DDehydration-responsive element-binding protein 2D [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.