Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1D01G225000.1 | Wheat | plastid | 96.48 | 96.11 |
TraesCS1A01G223400.1 | Wheat | nucleus | 95.31 | 93.85 |
HORVU1Hr1G060060.1 | Barley | nucleus, plastid | 92.58 | 77.2 |
KXG21759 | Sorghum | nucleus | 61.33 | 61.09 |
Zm00001d038001_P001 | Maize | nucleus | 58.2 | 60.08 |
Os05t0351200-00 | Rice | nucleus | 58.98 | 56.13 |
GSMUA_Achr3P10100_001 | Banana | nucleus | 42.58 | 38.65 |
GSMUA_Achr9P18060_001 | Banana | nucleus | 37.5 | 37.35 |
GSMUA_Achr5P07400_001 | Banana | nucleus | 41.41 | 36.3 |
VIT_13s0067g01400.t01 | Wine grape | nucleus | 40.23 | 33.66 |
CDY52427 | Canola | nucleus | 37.89 | 30.03 |
PGSC0003DMT400085168 | Potato | nucleus | 33.98 | 30.0 |
KRH73281 | Soybean | nucleus, plastid | 39.06 | 29.59 |
TraesCS2B01G529200.1 | Wheat | plastid | 22.27 | 29.53 |
AT2G40220.1 | Thale cress | nucleus | 37.5 | 29.27 |
Bra004978.1-P | Field mustard | nucleus | 35.94 | 29.02 |
Bra000178.1-P | Field mustard | nucleus | 36.72 | 27.98 |
CDY07614 | Canola | nucleus | 36.72 | 27.98 |
CDY54991 | Canola | nucleus | 36.72 | 27.89 |
KRH14926 | Soybean | nucleus | 35.16 | 27.86 |
PGSC0003DMT400092312 | Potato | nucleus | 33.98 | 27.71 |
TraesCS1B01G256000.1 | Wheat | nucleus | 23.44 | 26.09 |
TraesCS4B01G290100.1 | Wheat | nucleus | 25.0 | 20.32 |
TraesCS1B01G307000.1 | Wheat | nucleus | 22.27 | 14.81 |
TraesCS1B01G235100.2 | Wheat | nucleus | 21.48 | 14.18 |
Protein Annotations
MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:ABI4 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0009719 | GO:GO:0009738 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0048316 | InterPro:IPR001471 |
InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31241 | PANTHER:PTHR31241:SF7 |
SMART:SM00380 | SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS1B01G236700 | EnsemblPlants:TraesCS1B01G236700.1 | TIGR:cd00018 | SEG:seg |
Description
No Description!
Coordinates
chr1B:+:423823534..423824304
Molecular Weight (calculated)
27118.6 Da
IEP (calculated)
9.516
GRAVY (calculated)
-0.532
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHKPNPAVL TATTTEAASS SDVGSSVSSG GRKGKAAGKG GPENAKFRYR GVRQRSWGKW VAEIREPRKR SRKWLGTFAT AEDAARAYDR AALLLYGPRA
101: HLNLTAPPPL APGADPHPRP LGSSASSSSS SAPPPLRPLL PRPPQNSGGA GAVFQHHHHQ YRFLPLRVTP PSTSPPLYYA STATASTVTT TVAPPHETTA
201: PLPVASSSTM AAQDGAPAGA AEAEVTPEWY LAAEEEDYEA ALLWNEPDPL FDIFSK
101: HLNLTAPPPL APGADPHPRP LGSSASSSSS SAPPPLRPLL PRPPQNSGGA GAVFQHHHHQ YRFLPLRVTP PSTSPPLYYA STATASTVTT TVAPPHETTA
201: PLPVASSSTM AAQDGAPAGA AEAEVTPEWY LAAEEEDYEA ALLWNEPDPL FDIFSK
001: MDPLASQHQH NHLEDNNQTL THNNPQSDST TDSSTSSAQR KRKGKGGPDN SKFRYRGVRQ RSWGKWVAEI REPRKRTRKW LGTFATAEDA ARAYDRAAVY
101: LYGSRAQLNL TPSSPSSVSS SSSSVSAASS PSTSSSSTQT LRPLLPRPAA ATVGGGANFG PYGIPFNNNI FLNGGTSMLC PSYGFFPQQQ QQQNQMVQMG
201: QFQHQQYQNL HSNTNNNKIS DIELTDVPVT NSTSFHHEVA LGQEQGGSGC NNNSSMEDLN SLAGSVGSSL SITHPPPLVD PVCSMGLDPG YMVGDGSSTI
301: WPFGGEEEYS HNWGSIWDFI DPILGEFY
101: LYGSRAQLNL TPSSPSSVSS SSSSVSAASS PSTSSSSTQT LRPLLPRPAA ATVGGGANFG PYGIPFNNNI FLNGGTSMLC PSYGFFPQQQ QQQNQMVQMG
201: QFQHQQYQNL HSNTNNNKIS DIELTDVPVT NSTSFHHEVA LGQEQGGSGC NNNSSMEDLN SLAGSVGSSL SITHPPPLVD PVCSMGLDPG YMVGDGSSTI
301: WPFGGEEEYS HNWGSIWDFI DPILGEFY
Arabidopsis Description
ABI4Ethylene-responsive transcription factor ABI4 [Source:UniProtKB/Swiss-Prot;Acc:A0MES8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.