Factsheet for TraesCS1D01G225000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G236700.1	Wheat	nucleus	96.11	96.48
TraesCS1A01G223400.1	Wheat	nucleus	97.28	96.15
HORVU1Hr1G060060.1	Barley	nucleus, plastid	93.39	78.18
KXG21759	Sorghum	nucleus	61.87	61.87
Zm00001d038001_P001	Maize	nucleus	58.37	60.48
Os05t0351200-00	Rice	nucleus	59.92	57.25
GSMUA_Achr3P10100_001	Banana	nucleus	42.02	38.3
GSMUA_Achr9P18060_001	Banana	nucleus	37.74	37.74
GSMUA_Achr5P07400_001	Banana	nucleus	42.02	36.99
VIT_13s0067g01400.t01	Wine grape	nucleus	40.47	33.99
PGSC0003DMT400085168	Potato	nucleus	34.24	30.34
CDY52427	Canola	nucleus	38.13	30.34
KRH73281	Soybean	nucleus, plastid	39.3	29.88
AT2G40220.1	Thale cress	nucleus	37.74	29.57
Bra004978.1-P	Field mustard	nucleus	35.8	29.02
CDY07614	Canola	nucleus	36.97	28.27
Bra000178.1-P	Field mustard	nucleus	36.97	28.27
KRH14926	Soybean	nucleus	35.41	28.17
CDY54991	Canola	nucleus	36.58	27.89
PGSC0003DMT400092312	Potato	nucleus	33.85	27.71
TraesCS1D01G244500.1	Wheat	nucleus	22.96	25.54
TraesCS4D01G289200.1	Wheat	nucleus	24.9	20.06
TraesCS1D01G223600.2	Wheat	nucleus	21.79	14.32

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:ABI4	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009738	GO:GO:0009791	GO:GO:0009987	GO:GO:0048316	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF7
SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS1D01G225000	EnsemblPlants:TraesCS1D01G225000.1	TIGR:cd00018	SEG:seg

Description

No Description!

Coordinates

chr1D:+:313617470..313618243

Molecular Weight (calculated)

27248.6 Da

IEP (calculated)

9.517

GRAVY (calculated)

-0.537

Length

257 amino acids

Sequence
(BLAST)

001: MEHKPNPAVL AATTTEAASS SNVGSSASSG GRKGKAAGKG GPENAKFRYR GVRQRSWGKW VAEIREPRKR SRKWLGTFAT AEDAARAYDR AALLLYGPRA
101: HLNLTAPPPL APGADSHPRP LGSSASSSSS SAPPPLRPLL PRPPQHSGGA GAVFHHHHHH QYRFLPLRVT PPSTSPPLYY ASTATASTVT TTVAPPHETT
201: ASLPVASSST VAAQDGAPAE AAEAEVTPEW YLAAEEEDYE AALLWNEPDP LFDIFSK

Best Arabidopsis Sequence Match ( AT2G40220.1 )
(BLAST)

001: MDPLASQHQH NHLEDNNQTL THNNPQSDST TDSSTSSAQR KRKGKGGPDN SKFRYRGVRQ RSWGKWVAEI REPRKRTRKW LGTFATAEDA ARAYDRAAVY
101: LYGSRAQLNL TPSSPSSVSS SSSSVSAASS PSTSSSSTQT LRPLLPRPAA ATVGGGANFG PYGIPFNNNI FLNGGTSMLC PSYGFFPQQQ QQQNQMVQMG
201: QFQHQQYQNL HSNTNNNKIS DIELTDVPVT NSTSFHHEVA LGQEQGGSGC NNNSSMEDLN SLAGSVGSSL SITHPPPLVD PVCSMGLDPG YMVGDGSSTI
301: WPFGGEEEYS HNWGSIWDFI DPILGEFY

Arabidopsis Description

ABI4Ethylene-responsive transcription factor ABI4 [Source:UniProtKB/Swiss-Prot;Acc:A0MES8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.