Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G244800.1 | Wheat | nucleus | 99.13 | 98.71 |
| TraesCS1B01G256000.1 | Wheat | nucleus | 98.27 | 98.7 |
| HORVU1Hr1G063100.1 | Barley | nucleus | 92.64 | 86.29 |
| Os08t0565200-01 | Rice | nucleus | 58.44 | 58.7 |
| GSMUA_Achr3P00320_001 | Banana | nucleus | 44.16 | 52.31 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.59 | 50.99 |
| PGSC0003DMT400073853 | Potato | nucleus | 26.84 | 38.51 |
| Zm00001d031861_P001 | Maize | nucleus | 59.74 | 38.44 |
| Zm00001d049889_P001 | Maize | nucleus | 58.44 | 38.35 |
| Solyc04g050750.1.1 | Tomato | nucleus | 25.54 | 36.65 |
| CDY39036 | Canola | nucleus | 30.74 | 35.86 |
| Bra008200.1-P | Field mustard | nucleus | 30.74 | 35.86 |
| CDY20377 | Canola | nucleus | 29.87 | 34.85 |
| CDY70626 | Canola | nucleus | 30.74 | 34.8 |
| EER92302 | Sorghum | nucleus | 52.81 | 34.76 |
| AT1G75490.1 | Thale cress | nucleus | 30.74 | 34.47 |
| Bra003752.1-P | Field mustard | nucleus | 30.3 | 34.31 |
| CDX68128 | Canola | nucleus | 30.3 | 34.31 |
| OQU80673 | Sorghum | nucleus | 57.14 | 34.02 |
| CDY47519 | Canola | nucleus | 29.87 | 33.5 |
| Bra015840.1-P | Field mustard | nucleus, plastid | 29.87 | 33.5 |
| CDY64211 | Canola | nucleus, plastid | 29.0 | 32.52 |
| VIT_18s0001g13320.t01 | Wine grape | nucleus | 27.71 | 31.84 |
| KRH61095 | Soybean | nucleus | 33.77 | 31.84 |
| KRH51773 | Soybean | nucleus | 33.33 | 30.92 |
| KRH15125 | Soybean | nucleus | 32.9 | 26.86 |
| CDX70820 | Canola | nucleus | 32.47 | 26.79 |
| Solyc04g080910.1.1 | Tomato | nucleus | 28.57 | 26.61 |
| Bra006460.1-P | Field mustard | nucleus | 32.9 | 26.12 |
| Bra023674.1-P | Field mustard | nucleus | 32.47 | 26.04 |
| PGSC0003DMT400009506 | Potato | nucleus | 29.44 | 25.95 |
| CDY58117 | Canola | nucleus | 32.47 | 25.95 |
| KRH05892 | Soybean | nucleus | 31.6 | 25.44 |
| CDY02629 | Canola | nucleus | 31.6 | 25.35 |
| Bra002159.1-P | Field mustard | nucleus | 32.9 | 24.84 |
| CDX92610 | Canola | nucleus | 32.9 | 24.84 |
| AT5G18450.1 | Thale cress | nucleus | 32.03 | 24.1 |
| TraesCS1D01G225000.1 | Wheat | plastid | 25.54 | 22.96 |
| CDY25420 | Canola | nucleus | 32.47 | 22.87 |
| TraesCS4D01G289200.1 | Wheat | nucleus | 30.3 | 21.94 |
| TraesCS1D01G223600.2 | Wheat | nucleus | 34.63 | 20.46 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 |
| PFscan:PS51032 | PANTHER:PTHR31241 | PANTHER:PTHR31241:SF2 | SMART:SM00380 | SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS1D01G244500 |
| EnsemblPlants:TraesCS1D01G244500.1 | TIGR:cd00018 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1D:+:335287142..335287837
Molecular Weight (calculated)
24329.5 Da
IEP (calculated)
5.961
GRAVY (calculated)
-0.445
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQEVVAGMK QKKCCPLRRS RKGCMKGKGG PDNQQCPFRG VRQRTWGKWV AEIREPNRGA RLWLGTFASA LDAARAYDAA ARALYGDCAR LNLSASPSQM
101: QHPPAQGSGG ANGNSAPGTP CCSSNNSNSS ASTPTGTPTD MDCSAWMQPS YCYSTAEAPE DFEAYVTRLP KAEDFGLEGF QEVPLEVLAE AGGGVSIWDL
201: SIAPEMAAAA ASSAAASACT VPQQPLQQPS C
101: QHPPAQGSGG ANGNSAPGTP CCSSNNSNSS ASTPTGTPTD MDCSAWMQPS YCYSTAEAPE DFEAYVTRLP KAEDFGLEGF QEVPLEVLAE AGGGVSIWDL
201: SIAPEMAAAA ASSAAASACT VPQQPLQQPS C
001: MSSIEPKVMM VGANKKQRTV QASSRKGCMR GKGGPDNASC TYKGVRQRTW GKWVAEIREP NRGARLWLGT FDTSREAALA YDSAARKLYG PEAHLNLPES
101: LRSYPKTASS PASQTTPSSN TGGKSSSDSE SPCSSNEMSS CGRVTEEISW EHINVDLPVM DDSSIWEEAT MSLGFPWVHE GDNDISRFDT CISGGYSNWD
201: SFHSPL
101: LRSYPKTASS PASQTTPSSN TGGKSSSDSE SPCSSNEMSS CGRVTEEISW EHINVDLPVM DDSSIWEEAT MSLGFPWVHE GDNDISRFDT CISGGYSNWD
201: SFHSPL
Arabidopsis Description
DREB2DDehydration-responsive element-binding protein 2D [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.