Factsheet for Bra008200.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39036	Canola	nucleus	100.0	100.0
CDY20377	Canola	nucleus	97.47	97.47
AT1G75490.1	Thale cress	nucleus	87.88	84.47
Bra003752.1-P	Field mustard	nucleus	86.36	83.82
Bra015840.1-P	Field mustard	nucleus, plastid	84.34	81.07
VIT_18s0001g13320.t01	Wine grape	nucleus	43.94	43.28
KRH61095	Soybean	nucleus	51.52	41.63
KRH51773	Soybean	nucleus	51.52	40.96
KRH05892	Soybean	nucleus	52.02	35.89
KRH15125	Soybean	nucleus	50.51	35.34
GSMUA_AchrUn_...	Banana	nucleus	35.35	34.65
Solyc04g080910.1.1	Tomato	nucleus	42.93	34.27
HORVU2Hr1G111510.1	Barley	nucleus	33.33	34.2
TraesCS2B01G529200.1	Wheat	plastid	32.32	33.16
GSMUA_Achr3P00320_001	Banana	nucleus	32.32	32.82
PGSC0003DMT400009506	Potato	nucleus	42.93	32.44
TraesCS1B01G256000.1	Wheat	nucleus	36.36	31.3
TraesCS1A01G244800.1	Wheat	nucleus	36.36	31.03
Os08t0565200-01	Rice	nucleus	35.86	30.87
TraesCS1D01G244500.1	Wheat	nucleus	35.86	30.74
HORVU1Hr1G063100.1	Barley	nucleus	36.36	29.03
Bra005113.1-P	Field mustard	nucleus	31.31	25.1
Bra006460.1-P	Field mustard	nucleus	36.87	25.09
Bra023674.1-P	Field mustard	nucleus	36.36	25.0
Bra007341.1-P	Field mustard	nucleus	32.32	23.7
Bra014617.1-P	Field mustard	nucleus	30.81	23.55
Bra002159.1-P	Field mustard	nucleus	36.36	23.53
Bra028759.1-P	Field mustard	nucleus	32.83	21.31
Zm00001d049889_P001	Maize	nucleus	37.88	21.31
Zm00001d031861_P001	Maize	nucleus	37.37	20.61
Bra034159.1-P	Field mustard	nucleus	29.8	20.34
EER92302	Sorghum	nucleus	35.86	20.23
Bra005852.1-P	Field mustard	nucleus	32.32	19.51
OQU80673	Sorghum	nucleus	37.88	19.33
Bra029889.1-P	Field mustard	nucleus	30.3	19.11
Bra009112.1-P	Field mustard	nucleus	31.82	19.09
Bra017011.1-P	Field mustard	nucleus	31.82	18.75
Bra004978.1-P	Field mustard	nucleus	29.29	18.3
Bra000178.1-P	Field mustard	nucleus	30.3	17.86
Bra001386.1-P	Field mustard	nucleus	32.32	16.67

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra008200
EnsemblPlants:Bra008200.1	EnsemblPlants:Bra008200.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CVF3	PFAM:PF00847	PIRSF:PIRSF038123
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF18	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002545B4A	SEG:seg	:	:	:	:

Description

AT1G75490 (E=8e-088) | DNA binding / transcription factor

Coordinates

chrA02:+:13736168..13736764

Molecular Weight (calculated)

21690.8 Da

IEP (calculated)

5.596

GRAVY (calculated)

-0.759

Length

198 amino acids

Sequence
(BLAST)

001: MVGANKKQRT VHASSRKGCM RGKGGPDNAS CTYKGVRQRT WGKWVAEIRE PNRGARLWLG TFDTAREAAL AYDSAARKLY GSEAHLNLPE SLRSYPETVL
101: PGTQASHTPS SNTGGKSSDS INEESPSSSN EMSSWGTTEE ISWEHMNADL PVTDDSSIWE EATMSLGFPW VHEGDDISPF STCINGGYSN WDSFHSPL

Best Arabidopsis Sequence Match ( AT1G75490.1 )
(BLAST)

001: MSSIEPKVMM VGANKKQRTV QASSRKGCMR GKGGPDNASC TYKGVRQRTW GKWVAEIREP NRGARLWLGT FDTSREAALA YDSAARKLYG PEAHLNLPES
101: LRSYPKTASS PASQTTPSSN TGGKSSSDSE SPCSSNEMSS CGRVTEEISW EHINVDLPVM DDSSIWEEAT MSLGFPWVHE GDNDISRFDT CISGGYSNWD
201: SFHSPL

Arabidopsis Description

DREB2DDehydration-responsive element-binding protein 2D [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.