Factsheet for Bra003752.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68128	Canola	nucleus	100.0	100.0
CDY70626	Canola	nucleus	96.08	96.08
Bra008200.1-P	Field mustard	nucleus	83.82	86.36
AT1G75490.1	Thale cress	nucleus	86.27	85.44
Bra015840.1-P	Field mustard	nucleus, plastid	82.84	82.04
VIT_18s0001g13320.t01	Wine grape	nucleus	44.12	44.78
KRH61095	Soybean	nucleus	51.47	42.86
KRH51773	Soybean	nucleus	50.98	41.77
KRH15125	Soybean	nucleus	49.51	35.69
KRH05892	Soybean	nucleus	50.0	35.54
GSMUA_AchrUn_...	Banana	nucleus	34.31	34.65
Solyc04g080910.1.1	Tomato	nucleus	41.67	34.27
GSMUA_Achr3P00320_001	Banana	nucleus	32.35	33.85
TraesCS2B01G529200.1	Wheat	plastid	31.86	33.68
HORVU2Hr1G111510.1	Barley	nucleus	31.86	33.68
PGSC0003DMT400009506	Potato	nucleus	41.67	32.44
Os08t0565200-01	Rice	nucleus	35.29	31.3
TraesCS1B01G256000.1	Wheat	nucleus	34.8	30.87
TraesCS1A01G244800.1	Wheat	nucleus	34.8	30.6
TraesCS1D01G244500.1	Wheat	nucleus	34.31	30.3
HORVU1Hr1G063100.1	Barley	nucleus	34.8	28.63
Bra006460.1-P	Field mustard	nucleus	36.76	25.77
Bra005113.1-P	Field mustard	nucleus	30.88	25.51
Bra023674.1-P	Field mustard	nucleus	35.78	25.35
Bra002159.1-P	Field mustard	nucleus	35.29	23.53
Bra007341.1-P	Field mustard	nucleus	30.88	23.33
Bra014617.1-P	Field mustard	nucleus	28.92	22.78
Bra028759.1-P	Field mustard	nucleus	32.35	21.64
Bra034159.1-P	Field mustard	nucleus	29.9	21.03
Zm00001d049889_P001	Maize	nucleus	35.29	20.45
Bra005852.1-P	Field mustard	nucleus	31.86	19.82
Zm00001d031861_P001	Maize	nucleus	34.8	19.78
Bra029889.1-P	Field mustard	nucleus	30.39	19.75
Bra017011.1-P	Field mustard	nucleus	32.35	19.64
Bra009112.1-P	Field mustard	nucleus	31.37	19.39
EER92302	Sorghum	nucleus	33.33	19.37
Bra004978.1-P	Field mustard	nucleus	28.92	18.61
OQU80673	Sorghum	nucleus	34.8	18.3
Bra000178.1-P	Field mustard	nucleus	27.94	16.96
Bra001386.1-P	Field mustard	nucleus	31.86	16.93

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra003752	EnsemblPlants:Bra003752.1
EnsemblPlants:Bra003752.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CHR9	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31241	PANTHER:PTHR31241:SF18	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000189D18E	SEG:seg

Description

AT1G75490 (E=2e-092) | DNA binding / transcription factor

Coordinates

chrA07:-:14884805..14885419

Molecular Weight (calculated)

22640.1 Da

IEP (calculated)

6.519

GRAVY (calculated)

-0.771

Length

204 amino acids

Sequence
(BLAST)

001: MSSIEPKVRM VGANKKQRTV NASSRKGCMR GKGGPENASC TYKGVRQRTW GKWVAEIREP NRGARLWLGT FETSREAALA YDSAARKLYG PEAHLNLPES
101: LRSYPETASP GTQVSQTPSS NTSAKSSEES PRLSNEMSSW GTRSEISWEH MNVDLPVTDD SSIWEEATMS LGFPWVHEGN DDISLFNSCI SDGYSNWDSF
201: HSPL

Best Arabidopsis Sequence Match ( AT1G75490.1 )
(BLAST)

001: MSSIEPKVMM VGANKKQRTV QASSRKGCMR GKGGPDNASC TYKGVRQRTW GKWVAEIREP NRGARLWLGT FDTSREAALA YDSAARKLYG PEAHLNLPES
101: LRSYPKTASS PASQTTPSSN TGGKSSSDSE SPCSSNEMSS CGRVTEEISW EHINVDLPVM DDSSIWEEAT MSLGFPWVHE GDNDISRFDT CISGGYSNWD
201: SFHSPL

Arabidopsis Description

DREB2DDehydration-responsive element-binding protein 2D [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.