Factsheet for Bra004978.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54991	Canola	nucleus	91.8	86.35
Bra000178.1-P	Field mustard	nucleus	80.76	76.19
AT2G40220.1	Thale cress	nucleus	76.34	73.78
VIT_13s0067g01400.t01	Wine grape	nucleus	41.96	43.46
GSMUA_Achr5P07400_001	Banana	nucleus	36.28	39.38
KRH73281	Soybean	nucleus, plastid	41.96	39.35
GSMUA_Achr9P18060_001	Banana	nucleus	31.23	38.52
GSMUA_Achr3P10100_001	Banana	nucleus	34.07	38.3
PGSC0003DMT400085168	Potato	nucleus	35.02	38.28
KRH14926	Soybean	nucleus	38.8	38.08
Zm00001d038001_P001	Maize	nucleus	29.02	37.1
KXG21759	Sorghum	nucleus	29.65	36.58
TraesCS1B01G236700.1	Wheat	nucleus	29.02	35.94
TraesCS1D01G225000.1	Wheat	plastid	29.02	35.8
TraesCS1A01G223400.1	Wheat	nucleus	29.34	35.77
PGSC0003DMT400092312	Potato	nucleus	35.33	35.67
Os05t0351200-00	Rice	nucleus	29.97	35.32
HORVU1Hr1G060060.1	Barley	nucleus, plastid	29.02	29.97
Bra008200.1-P	Field mustard	nucleus	18.3	29.29
Bra003752.1-P	Field mustard	nucleus	18.61	28.92
Bra015840.1-P	Field mustard	nucleus, plastid	17.98	27.67
Bra005113.1-P	Field mustard	nucleus	19.24	24.7
Bra007341.1-P	Field mustard	nucleus	20.19	23.7
Bra014617.1-P	Field mustard	nucleus	18.93	23.17
Bra006460.1-P	Field mustard	nucleus	20.19	21.99
Bra023674.1-P	Field mustard	nucleus	19.56	21.53
Bra034159.1-P	Field mustard	nucleus	19.24	21.03
Bra002159.1-P	Field mustard	nucleus	19.56	20.26
Bra028759.1-P	Field mustard	nucleus	18.61	19.34
Bra029889.1-P	Field mustard	nucleus	18.93	19.11
Bra005852.1-P	Field mustard	nucleus	19.24	18.6
Bra009112.1-P	Field mustard	nucleus	18.93	18.18
Bra001386.1-P	Field mustard	nucleus	21.45	17.71
Bra017011.1-P	Field mustard	nucleus	15.77	14.88

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:ABI4	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra004978
EnsemblPlants:Bra004978.1	EnsemblPlants:Bra004978.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009738
GO:GO:0009791	GO:GO:0009987	GO:GO:0048316	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CL91
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF7	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI00025472DF	SEG:seg	:	:	:

Description

AT2G40220 (E=4e-078) ABI4, SUN6, SIS5, ISI3, GIN6, SAN5 | ABI4 (ABA INSENSITIVE 4); DNA binding / transcription factor

Coordinates

chrA05:+:2770916..2771869

Molecular Weight (calculated)

34366.5 Da

IEP (calculated)

6.624

GRAVY (calculated)

-0.621

Length

317 amino acids

Sequence
(BLAST)

001: MDPLPSQQEQ QHNLDGTIQQ TLAQNPQSDS TTTTTDSASP AQQRKRKGGP ENSKFRYRGV RQRSWGKWVA EIREPRKRTR KWLGTFATAE DAARAYDRAA
101: VFLYGSRAQL NLSPSSPSSV SSTSSSVSAA SSSPSSSSSS TQTLRPLLPR PSAASLASSF IPCGLPFTNN IFLSGGTSTF CPSYGIFPHQ QTQMTQVGQF
201: QHQPYQNLHS CNNNNKIGDV EQTDVPLVKS PSFHHEVALG QEQGGSVCNN NNNSMENLNS LVGSVGSTVV DPVSSMGMDP GYNIVGDGSS PVWPFSGEDE
301: YSHWGSIWDF IDPLLDI

Best Arabidopsis Sequence Match ( AT2G40220.1 )
(BLAST)

001: MDPLASQHQH NHLEDNNQTL THNNPQSDST TDSSTSSAQR KRKGKGGPDN SKFRYRGVRQ RSWGKWVAEI REPRKRTRKW LGTFATAEDA ARAYDRAAVY
101: LYGSRAQLNL TPSSPSSVSS SSSSVSAASS PSTSSSSTQT LRPLLPRPAA ATVGGGANFG PYGIPFNNNI FLNGGTSMLC PSYGFFPQQQ QQQNQMVQMG
201: QFQHQQYQNL HSNTNNNKIS DIELTDVPVT NSTSFHHEVA LGQEQGGSGC NNNSSMEDLN SLAGSVGSSL SITHPPPLVD PVCSMGLDPG YMVGDGSSTI
301: WPFGGEEEYS HNWGSIWDFI DPILGEFY

Arabidopsis Description

ABI4Ethylene-responsive transcription factor ABI4 [Source:UniProtKB/Swiss-Prot;Acc:A0MES8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.