Factsheet for PGSC0003DMT400092312

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400085168	Potato	nucleus	84.39	91.38
VIT_13s0067g01400.t01	Wine grape	nucleus	45.54	46.73
PGSC0003DMT400041067	Potato	nucleus	15.61	41.53
KRH73281	Soybean	nucleus, plastid	41.4	38.46
GSMUA_Achr9P18060_001	Banana	nucleus	31.21	38.13
GSMUA_Achr3P10100_001	Banana	nucleus	33.12	36.88
Zm00001d038001_P001	Maize	nucleus	28.98	36.69
KRH14926	Soybean	nucleus	37.58	36.53
GSMUA_Achr5P07400_001	Banana	nucleus	33.76	36.3
KXG21759	Sorghum	nucleus	29.62	36.19
Bra004978.1-P	Field mustard	nucleus	35.67	35.33
CDY52427	Canola	nucleus	36.31	35.29
AT2G40220.1	Thale cress	nucleus	36.62	35.06
CDY54991	Canola	nucleus	36.62	34.12
TraesCS1B01G236700.1	Wheat	nucleus	27.71	33.98
TraesCS1D01G225000.1	Wheat	plastid	27.71	33.85
Os05t0351200-00	Rice	nucleus	28.98	33.83
PGSC0003DMT400073853	Potato	nucleus	17.2	33.54
TraesCS1A01G223400.1	Wheat	nucleus	27.71	33.46
Bra000178.1-P	Field mustard	nucleus	34.08	31.85
CDY07614	Canola	nucleus	34.08	31.85
HORVU1Hr1G060060.1	Barley	nucleus, plastid	27.71	28.34
PGSC0003DMT400009506	Potato	nucleus	17.52	20.99
PGSC0003DMT400060970	Potato	nucleus	20.06	20.13
PGSC0003DMT400061541	Potato	nucleus	17.83	17.5
PGSC0003DMT400069733	Potato	nucleus	19.11	14.67
PGSC0003DMT400041064	Potato	nucleus	17.52	12.04
PGSC0003DMT400041065	Potato	nucleus	13.69	9.82

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:ABI4	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009738	GO:GO:0009791	GO:GO:0009987	GO:GO:0048316
InterPro:IPR001471	InterPro:IPR036955	UniProt:M1DPJ6	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400041883	PGSC:PGSC0003DMG400041883
EnsemblPlants:PGSC0003DMT400092312	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF7	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0002964FEA	SEG:seg	:	:	:

Description

SGR [Source:PGSC_GENE;Acc:PGSC0003DMG400041883]

Coordinates

chr3:+:35393272..35394216

Molecular Weight (calculated)

34844.5 Da

IEP (calculated)

6.250

GRAVY (calculated)

-0.904

Length

314 amino acids

Sequence
(BLAST)

001: MNSTSAGSNN DQHPHPTQDL DLTNQEDKTT TASLTTQTSS EENSSSRNKK GSKGKGGPDN NKFRYRGVRQ RSWGKWVAEI REPRKRTRRW LGTFATAEDA
101: ARAYDRAAII LYGSKAQLNL QPSGANATSS SSNSSKRGSA TLSSTTQTLR PLLPRPPSGF DLSFSSSSST LLPPNVLAPA NNYIPYGFYP AVQYAEDISQ
201: NPQHSIQKQT FDDNYGFLDG ETTKASGMIW SDSNSNPNPN PREEYQNQQY NQLQHQHNCL YDNINTFADA APVVSDPVAA VVSPIFWPPI ADDNYNYHPA
301: DIWDYGNDPF LFDF

Best Arabidopsis Sequence Match ( AT2G40220.1 )
(BLAST)

001: MDPLASQHQH NHLEDNNQTL THNNPQSDST TDSSTSSAQR KRKGKGGPDN SKFRYRGVRQ RSWGKWVAEI REPRKRTRKW LGTFATAEDA ARAYDRAAVY
101: LYGSRAQLNL TPSSPSSVSS SSSSVSAASS PSTSSSSTQT LRPLLPRPAA ATVGGGANFG PYGIPFNNNI FLNGGTSMLC PSYGFFPQQQ QQQNQMVQMG
201: QFQHQQYQNL HSNTNNNKIS DIELTDVPVT NSTSFHHEVA LGQEQGGSGC NNNSSMEDLN SLAGSVGSSL SITHPPPLVD PVCSMGLDPG YMVGDGSSTI
301: WPFGGEEEYS HNWGSIWDFI DPILGEFY

Arabidopsis Description

ABI4Ethylene-responsive transcription factor ABI4 [Source:UniProtKB/Swiss-Prot;Acc:A0MES8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.