Factsheet for PGSC0003DMT400069733

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052410.1.1	Tomato	nucleus	87.78	89.97
PGSC0003DMT400061541	Potato	nucleus	46.45	59.38
KRH26854	Soybean	nucleus	24.69	51.27
KRH22495	Soybean	nucleus	24.69	51.01
AT2G40350.2	Thale cress	nucleus	20.29	50.61
PGSC0003DMT400041067	Potato	nucleus	14.43	50.0
KRH56072	Soybean	nucleus	24.45	46.73
KRH25441	Soybean	nucleus	23.72	45.97
VIT_13s0067g01960.t01	Wine grape	nucleus	38.39	44.23
CDX93190	Canola	nucleus	21.52	41.31
KRH73245	Soybean	nucleus	38.14	39.8
PGSC0003DMT400073853	Potato	nucleus	15.65	39.75
KRH14906	Soybean	nucleus	37.9	39.44
Bra017011.1-P	Field mustard	nucleus	29.1	35.42
CDY52924	Canola	nucleus	29.1	35.42
GSMUA_Achr11P...	Banana	nucleus	22.74	33.33
AT2G40340.6	Thale cress	mitochondrion, nucleus, plastid	28.36	33.33
GSMUA_Achr9P04630_001	Banana	nucleus	23.72	32.66
GSMUA_Achr5P28050_001	Banana	nucleus	19.8	30.45
GSMUA_Achr6P32780_001	Banana	nucleus	26.41	26.28
PGSC0003DMT400060970	Potato	nucleus	19.56	25.56
PGSC0003DMT400009506	Potato	nucleus	16.14	25.19
PGSC0003DMT400041064	Potato	nucleus	24.94	22.32
PGSC0003DMT400085168	Potato	nucleus	15.16	21.38
PGSC0003DMT400041065	Potato	nucleus	21.03	19.63
PGSC0003DMT400092312	Potato	nucleus	14.67	19.11

Protein Annotations

EntrezGene:102578564	MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ncoils:Coil
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:M1CL10	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400027117	PGSC:PGSC0003DMG400027117	EnsemblPlants:PGSC0003DMT400069733
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF2	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI000296F077	RefSeq:XP_006355639.1	RefSeq:XP_015167944.1	SEG:seg	:	:

Description

AP2-domain DNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027117]

Coordinates

chr5:+:47694466..47697302

Molecular Weight (calculated)

46126.3 Da

IEP (calculated)

4.381

GRAVY (calculated)

-0.899

Length

409 amino acids

Sequence
(BLAST)

001: MAVLDQTSNM MLPMDYTRKK KSRSRKDAPK NVADTLAKWK EVNEKLDACD DDGRKPVRKV PAKGSKKGCM KGKGGPDNGR CKYRGVRQRT WGKWVAEIRE
101: PHRGRRLWLG TFDTAIEAAL AYDEAARAMY GPCARLNLLD YYPSSKESSK DDSSLPTESH SDSNTASSFS EVCPADDMMR GRANVPEIRY EDGASEIKFD
201: GTRTGSNKVG TPLSSLREEA KDEAKEVLDK SETFTPLRSL REEAEDKAKE VLDKSETFEI KEEPVACSYD SWDIGQEDLG NLCLDDEMFD VNELLGMMDS
301: TPLDASAPSQ DVGFVPPKQE QYAYDPSYRL QNAAYDNNQL SNPSYQLENA DDQFSNPYQL DNADVNTLEG LQQMEQQPPI EIDYDFDFLR PGRQEDFNFC
401: LDDLGVLDF

Best Arabidopsis Sequence Match ( AT2G40340.6 )
(BLAST)

001: MKTSSCSYFG VITFRKRKSR GTRDVAEILR QWREYNEQIE AESCIDGGGP KSIRKPPPKG SRKGCMKGKG GPENGICDYR GVRQRRWGKW VAEIREPDGG
101: ARLWLGTFSS SYEAALAYDE AAKAIYGQSA RLNLPEITNR SSSTAATATV SGSVTAFSDE SEVCAREDTN ASSGFGQVKL EDCSDEYVLL DSSQCIKEEL
201: KGKEEVREEH NLAVGFGIGQ DSKRETLDAW LMGNGNEQEP LEFGVDETFD INELLGILND NNVSGQETMQ YQVDRHPNFS YQTQFPNSNL LGSLNPMEIA
301: QPGVDYGCPY VQPSDMENYG IDLDHRRFND LDIQDLDFGG DKDVHGST

Arabidopsis Description

DREB2CIntegrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G40340]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.