Factsheet for VIT_13s0067g01960.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22495	Soybean	nucleus	28.73	51.52
KRH26854	Soybean	nucleus	28.45	51.27
AT2G40350.2	Thale cress	nucleus	23.66	51.22
CDX93190	Canola	nucleus	30.42	50.7
KRH56072	Soybean	nucleus	29.01	48.13
KRH25441	Soybean	nucleus	27.61	46.45
Solyc06g050520.1.1	Tomato	nucleus	38.03	45.0
PGSC0003DMT400061541	Potato	nucleus	39.15	43.44
KRH73245	Soybean	nucleus	46.76	42.35
KRH14906	Soybean	nucleus	46.76	42.24
Bra017011.1-P	Field mustard	nucleus	37.75	39.88
CDY52924	Canola	nucleus	37.46	39.58
Solyc05g052410.1.1	Tomato	nucleus	44.23	39.35
PGSC0003DMT400069733	Potato	nucleus	44.23	38.39
AT2G40340.6	Thale cress	mitochondrion, nucleus, plastid	36.62	37.36
GSMUA_Achr9P04630_001	Banana	nucleus	29.01	34.68
VIT_18s0001g13320.t01	Wine grape	nucleus	19.15	33.83
GSMUA_Achr11P...	Banana	nucleus	26.2	33.33
GSMUA_Achr5P28050_001	Banana	nucleus	24.23	32.33
GSMUA_Achr6P32780_001	Banana	nucleus	31.27	27.01
VIT_08s0007g08150.t01	Wine grape	nucleus	21.41	26.48
VIT_13s0067g01400.t01	Wine grape	nucleus	18.31	21.24

Protein Annotations

EntrezGene:100267216	wikigene:100267216	MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ProteinID:CCB49826	ProteinID:CCB49826.1	InterPro:DNA-bd_dom_sf	UniProt:F6HCA2	EMBL:FN595514	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0044212	GO:GO:0045893	InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100267216	wikigene:LOC100267216
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF17	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI00019845AC	ArrayExpress:VIT_13s0067g01960	EnsemblPlantsGene:VIT_13s0067g01960	EnsemblPlants:VIT_13s0067g01960.t01	RefSeq:XP_002273838
RefSeq:XP_002273838.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:-:1081303..1084157

Molecular Weight (calculated)

38740.1 Da

IEP (calculated)

4.675

GRAVY (calculated)

-0.656

Length

355 amino acids

Sequence
(BLAST)

001: MSSGVIERKR KSRSRRSGPN SVAETLARWK QYNDILDSVR KAPAKGSKKG CMKGKGGPEN SICGYRGVRQ RTWGKWVAEI REPNRGSRLW LGTFPTAIEA
101: ALAYDEAARA MYGSSARLNL PNYTTSLKDS SSAPTTSVSD STTTTSNYSE VCAYEDSKKP VLPSIKHESG EGESGISGGM LSAVVKAEPA TPVSLVTQGG
201: GNDPVNVGNE PVDAMKLQHE ENGHSLDAMY FKNEDGGQDF LEGFPMDEMF DVDEFLRAID SDPLASYGTR QELGHDSGQV GSFETDNMQW EKPTDLSYQL
301: QNPDAKLLGS LNHMEQVPSD FDYCYGFLQP GKQLDPCIGL NDQGLLDLEL SDMGF

Best Arabidopsis Sequence Match ( AT2G40340.1 )
(BLAST)

001: MPSEIVDRKR KSRGTRDVAE ILRQWREYNE QIEAESCIDG GGPKSIRKPP PKGSRKGCMK GKGGPENGIC DYRGVRQRRW GKWVAEIREP DGGARLWLGT
101: FSSSYEAALA YDEAAKAIYG QSARLNLPEI TNRSSSTAAT ATVSGSVTAF SDESEVCARE DTNASSGFGQ VKLEDCSDEY VLLDSSQCIK EELKGKEEVR
201: EEHNLAVGFG IGQDSKRETL DAWLMGNGNE QEPLEFGVDE TFDINELLGI LNDNNVSGQE TMQYQVDRHP NFSYQTQFPN SNLLGSLNPM EIAQPGVDYG
301: CPYVQPSDME NYGIDLDHRR FNDLDIQDLD FGGDKDVHGS T

Arabidopsis Description

DREB2CIntegrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G40340]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.