CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26854	Soybean	nucleus	95.96	96.45
KRH56072	Soybean	nucleus	77.27	71.5
KRH25441	Soybean	nucleus	74.75	70.14
AT2G40350.2	Thale cress	nucleus	39.39	47.56
CDX93190	Canola	nucleus	34.85	32.39
Solyc06g050520.1.1	Tomato	nucleus	47.98	31.67
PGSC0003DMT400061541	Potato	nucleus	51.01	31.56
KRH61095	Soybean	nucleus	36.36	29.39
GSMUA_Achr11P...	Banana	nucleus	40.91	29.03
KRH51773	Soybean	nucleus	36.36	28.92
VIT_13s0067g01960.t01	Wine grape	nucleus	51.52	28.73
KRH73245	Soybean	nucleus	53.54	27.04
Bra017011.1-P	Field mustard	nucleus	45.45	26.79
CDY52924	Canola	nucleus	45.45	26.79
GSMUA_Achr9P04630_001	Banana	nucleus	39.39	26.26
KRH14906	Soybean	nucleus	51.52	25.95
GSMUA_Achr5P28050_001	Banana	nucleus	34.34	25.56
Solyc05g052410.1.1	Tomato	nucleus	51.01	25.31
AT2G40340.6	Thale cress	mitochondrion, nucleus, plastid	44.44	25.29
KRH05892	Soybean	nucleus	35.86	24.74
KRH15125	Soybean	nucleus	35.35	24.73
PGSC0003DMT400069733	Potato	nucleus	51.01	24.69
KRH49463	Soybean	nucleus	42.93	24.15
KRH66977	Soybean	nucleus	33.33	23.24
KRG95297	Soybean	nucleus	32.83	23.05
KRG93713	Soybean	nucleus	31.31	22.71
GSMUA_Achr6P32780_001	Banana	nucleus	45.96	22.14
KRH16554	Soybean	nucleus	28.28	21.62
KRH71963	Soybean	nucleus	33.33	21.36
KRH33104	Soybean	nucleus	34.34	21.32
KRG93709	Soybean	nucleus	25.76	21.25
KRH14926	Soybean	nucleus	29.29	17.96
KRH73281	Soybean	nucleus, plastid	29.8	17.46
KRH00328	Soybean	nucleus	44.44	16.7

Protein Annotations

EntrezGene:100499747	MapMan:15.5.7.2	Gene3D:3.30.730.10	EMBL:ACUP02008415	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EMBL:BT089389	UniProt:C6SW46	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_13G304300	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0044212	GO:GO:0045893	InterPro:IPR001471
InterPro:IPR036955	EnsemblPlants:KRH22495	ProteinID:KRH22495	ProteinID:KRH22495.1	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF2	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0001B15A0E
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:40128391..40130390

Molecular Weight (calculated)

21060.5 Da

IEP (calculated)

8.621

GRAVY (calculated)

-0.681

Length

198 amino acids

Sequence
(BLAST)

001: MLAKAHNKGD GSKSLAKILA KWKEYNAQID SSSDADKPIR KVPAKGSKKG CMKGKGGPEN SRCNYRGVRQ RTWGKWVAEI REPNRGNRLW LGTFPTAIGA
101: ALAYDEAARA MYGSCARLNF PNVSVSSFSE ESSKDSPSAN HCGSSMAVSA NESMISPSNS GVDAEEDVDM EPISLSLSVK HENGEGESGI SSSPPSSS

Best Arabidopsis Sequence Match ( AT2G40350.2 )
(BLAST)

001: MPSASEIVDR KRKSRGTRDV AEILRKWREY NEQTEADSCI DGGGSKPIRK APPKRSRKGC MKGKGGPENG ICDYTGVRQR TWGKWVAEIR EPGRGAKLWL
101: GTFSSSYEAA LAYDEASKAI YGQSARLNLP LLPLCQARLL HFLMNLKFVH VRIQMQDLVL VRSD

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G40350]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.