CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49463	Soybean	nucleus	58.06	86.93
KRH22495	Soybean	nucleus	16.7	44.44
KRH26854	Soybean	nucleus	16.51	44.16
KRH56072	Soybean	nucleus	16.32	40.19
KRH25441	Soybean	nucleus	15.56	38.86
AT2G38340.1	Thale cress	nucleus	15.75	34.02
CDY71905	Canola	nucleus	15.56	33.61
Bra005113.1-P	Field mustard	nucleus	15.37	32.79
CDY54455	Canola	nucleus	14.99	31.98
KRH51773	Soybean	nucleus	14.8	31.33
KRH61095	Soybean	nucleus	14.42	31.02
KRH14906	Soybean	nucleus	21.44	28.75
KRH73245	Soybean	nucleus	21.25	28.57
KRH66977	Soybean	nucleus	14.99	27.82
KRH05892	Soybean	nucleus	14.99	27.53
KRG95297	Soybean	nucleus	14.61	27.3
CDY61527	Canola	nucleus	15.18	27.21
KRG93713	Soybean	nucleus	14.04	27.11
KRH15125	Soybean	nucleus	14.23	26.5
KRH71963	Soybean	nucleus	14.99	25.57
KRH16554	Soybean	nucleus	12.52	25.48
EES18376	Sorghum	mitochondrion	11.39	25.21
KRH33104	Soybean	nucleus	14.99	24.76
KRG93709	Soybean	nucleus	11.2	24.58
Solyc10g076370.1.1	Tomato	nucleus	17.27	22.47
Solyc10g076380.1.1	Tomato	nucleus	12.9	21.05
PGSC0003DMT400041064	Potato	nucleus	17.84	20.57
Os05t0473300-01	Rice	nucleus	10.06	20.31
Zm00001d038446_P001	Maize	vacuole	10.44	19.71
KRH14926	Soybean	nucleus	11.76	19.2
KRH73281	Soybean	nucleus, plastid	11.95	18.64
PGSC0003DMT400041065	Potato	nucleus	14.8	17.81
TraesCS1B01G307000.1	Wheat	nucleus	12.14	16.62
HORVU1Hr1G070410.1	Barley	nucleus	10.63	14.47

Protein Annotations

EntrezGene:100500303	MapMan:15.5.7.2	Gene3D:3.30.730.10	EMBL:ACUP02011435	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_18G206600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0044212	GO:GO:0045893	InterPro:IPR001471	InterPro:IPR036955	EMBL:JX440389
UniProt:K0H6H6	EnsemblPlants:KRH00328	ProteinID:KRH00328	ProteinID:KRH00328.1	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF2	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000233E6D3
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:49030689..49032992

Molecular Weight (calculated)

58442.4 Da

IEP (calculated)

6.121

GRAVY (calculated)

-0.768

Length

527 amino acids

Sequence
(BLAST)

001: MKTNNNVSGE RKSRKRRNGG SDYVEDTLEK WKEYNRQQQL GSRENGVEVI HKAPAKGSRK GCMRGKGGPQ NSDCKFRGVR QRIWGKWVAE IREPINGKLV
101: GEKANRLWLG TFSTALEAAL AYDEAAKALY GPCARLNFSE SIDSNGSSSS SGSDKKSPSG FSENGCDVAK AEELEVNRHR CHEEKPRFSK VGVFEETEEK
201: PILSGGCVAD DSIEELKEIT TGFEQCQTSE ECMATTLKNV KSEVPGESEE MERELEEVVK NSGIGGEVNH LRKEPMDIAM NARGNYCSSP GSSDAATEHE
301: ILLKSEETRG ESVETLNSCE LSCSNHCLGF MHNNMLPDTN LRPNPEASIA KKHTEEVISE ILGLCQGKCL KISHGQSPNE QFRRSEHFDE MKTRLKGLEC
401: KLRAHSIHYK NQAPIVGDSN HPSMQGIHLF GGGTVGPIES MSQVEALNNI NTNRNSLPGF SSGHGRKLCD LSQQLHKLGG YLPEHWNSVQ FPDLEVGHDY
501: SFLNPDYDFG LYEEQKLLDI CFPHVGS

Best Arabidopsis Sequence Match ( AT2G40350.2 )
(BLAST)

001: MPSASEIVDR KRKSRGTRDV AEILRKWREY NEQTEADSCI DGGGSKPIRK APPKRSRKGC MKGKGGPENG ICDYTGVRQR TWGKWVAEIR EPGRGAKLWL
101: GTFSSSYEAA LAYDEASKAI YGQSARLNLP LLPLCQARLL HFLMNLKFVH VRIQMQDLVL VRSD

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G40350]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.