CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22495	Soybean	nucleus	96.45	95.96
KRH56072	Soybean	nucleus	75.63	69.63
KRH25441	Soybean	nucleus	73.6	68.72
AT2G40350.2	Thale cress	nucleus	39.09	46.95
CDX93190	Canola	nucleus	34.52	31.92
Solyc06g050520.1.1	Tomato	nucleus	47.72	31.33
PGSC0003DMT400061541	Potato	nucleus	50.76	31.25
KRH61095	Soybean	nucleus	36.04	28.98
KRH51773	Soybean	nucleus	36.55	28.92
GSMUA_Achr11P...	Banana	nucleus	40.61	28.67
VIT_13s0067g01960.t01	Wine grape	nucleus	51.27	28.45
KRH73245	Soybean	nucleus	53.3	26.79
GSMUA_Achr9P04630_001	Banana	nucleus	39.59	26.26
Bra017011.1-P	Field mustard	nucleus	44.67	26.19
CDY52924	Canola	nucleus	44.67	26.19
KRH14906	Soybean	nucleus	51.27	25.7
GSMUA_Achr5P28050_001	Banana	nucleus	34.52	25.56
Solyc05g052410.1.1	Tomato	nucleus	51.27	25.31
KRH15125	Soybean	nucleus	36.04	25.09
KRH05892	Soybean	nucleus	36.55	25.09
AT2G40340.6	Thale cress	mitochondrion, nucleus, plastid	44.16	25.0
PGSC0003DMT400069733	Potato	nucleus	51.27	24.69
KRH49463	Soybean	nucleus	42.64	23.86
KRH66977	Soybean	nucleus	32.99	22.89
KRG95297	Soybean	nucleus	32.49	22.7
GSMUA_Achr6P32780_001	Banana	nucleus	46.7	22.38
KRG93713	Soybean	nucleus	30.96	22.34
KRG93709	Soybean	nucleus	25.89	21.25
KRH16554	Soybean	nucleus	27.92	21.24
KRH71963	Soybean	nucleus	32.99	21.04
KRH33104	Soybean	nucleus	34.01	21.0
KRH14926	Soybean	nucleus	29.44	17.96
KRH73281	Soybean	nucleus, plastid	29.95	17.46
KRH00328	Soybean	nucleus	44.16	16.51

Protein Annotations

EntrezGene:100527471	MapMan:15.5.7.2	Gene3D:3.30.730.10	EMBL:ACUP02007753	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_12G197700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0044212	GO:GO:0045893	UniProt:I1LU97	InterPro:IPR001471	InterPro:IPR036955
EnsemblPlants:KRH26854	ProteinID:KRH26854	ProteinID:KRH26854.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31241	PANTHER:PTHR31241:SF2	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00023D044A	SEG:seg

Description

hypothetical protein

Coordinates

chr12:+:35885612..35887534

Molecular Weight (calculated)

20953.5 Da

IEP (calculated)

8.914

GRAVY (calculated)

-0.657

Length

197 amino acids

Sequence
(BLAST)

001: MLAKTHNKGD GSKSLAKILA KWKEYNAQID SSSDADKPVR KVPAKGSKKG CMKGKGGPEN SRCNYRGVRQ RTWGKWVAEI REPNRGNRLW LGTFPTAIGA
101: ALAYDEAARA MYGSCARLNF PNVSVSSFSE ESSKDSPVAN HCGSSMAVSA NESMISPSNS GVGAEDDVDM EPISLSLTVK HENGEGESGI SSSPPSP

Best Arabidopsis Sequence Match ( AT2G40350.2 )
(BLAST)

001: MPSASEIVDR KRKSRGTRDV AEILRKWREY NEQTEADSCI DGGGSKPIRK APPKRSRKGC MKGKGGPENG ICDYTGVRQR TWGKWVAEIR EPGRGAKLWL
101: GTFSSSYEAA LAYDEASKAI YGQSARLNLP LLPLCQARLL HFLMNLKFVH VRIQMQDLVL VRSD

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G40350]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.