Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28044313
|
gfp PMID:
28044313
doi
Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China., School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China., State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/Guangdong Provincial Key Laboratory of Postharvest Science of Fruits and Vegetables, College of Horticultural Science, South China Agricultural University, Guangzhou, 510642, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P04630_001 | Banana | nucleus | 41.85 | 57.91 |
| KRH26854 | Soybean | nucleus | 22.38 | 46.7 |
| KRH22495 | Soybean | nucleus | 22.14 | 45.96 |
| KRH56072 | Soybean | nucleus | 21.9 | 42.06 |
| KRH25441 | Soybean | nucleus | 21.17 | 41.23 |
| GSMUA_Achr11P... | Banana | nucleus | 26.52 | 39.07 |
| GSMUA_Achr5P28050_001 | Banana | nucleus | 24.09 | 37.22 |
| Solyc06g050520.1.1 | Tomato | nucleus | 26.03 | 35.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.03 | 34.65 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.03 | 33.54 |
| PGSC0003DMT400061541 | Potato | nucleus | 25.3 | 32.5 |
| GSMUA_Achr3P00320_001 | Banana | nucleus | 15.09 | 31.79 |
| VIT_13s0067g01960.t01 | Wine grape | nucleus | 27.01 | 31.27 |
| KRH14906 | Soybean | nucleus | 27.01 | 28.24 |
| KRH73245 | Soybean | nucleus | 26.76 | 28.06 |
| Solyc05g052410.1.1 | Tomato | nucleus | 26.28 | 27.07 |
| PGSC0003DMT400069733 | Potato | nucleus | 26.28 | 26.41 |
| GSMUA_Achr9P18060_001 | Banana | nucleus | 14.11 | 22.57 |
| GSMUA_Achr3P29800_001 | Banana | mitochondrion | 10.22 | 22.34 |
| GSMUA_Achr3P10100_001 | Banana | nucleus | 15.09 | 21.99 |
| GSMUA_Achr5P07400_001 | Banana | nucleus | 14.6 | 20.55 |
| GSMUA_Achr7P27150_001 | Banana | nucleus | 11.19 | 17.69 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr6G32780_001 | EnsemblPlants:GSMUA_Achr6P32780_001 | EnsemblPlants:GSMUA_Achr6T32780_001 |
| InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0TC72 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31241 | PANTHER:PTHR31241:SF17 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0002954090 | SEG:seg |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G32780_001]
Coordinates
chr6:-:32020103..32024744
Molecular Weight (calculated)
45912.1 Da
IEP (calculated)
7.640
GRAVY (calculated)
-0.661
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVYVYGQIH NPSLRDQAIG HAIAERSSDT CQTRRLSFRH VLSHVTRLLL YKDLGTAFGI SWRPRNIWKP RRKRSRALNQ EEARQMGVMT MVESDRRSRV
101: RRGRNGSSSV AETIAWWRER NRQLKCSVDT EKRVRRPPAK GSKKGCMRGK GGPENPNCRY RGVRQRTWGK WVAEIREPNR GSRLWLGTFP TAFQAALAYD
201: DAARAMYGTM ARLNLPAMTR GLCGSTSTSY NSEDVDASVS CDFGIKTPRV DAGSETVDAP RTWADNIKHP KIELKEDVAS DMWPSSAADA PETQSTEASV
301: DLLLCQSPRE DEFSVEEMLR MMGTDTDNGA PDQFGAVAAD TGWQCMIPAD VGLDLQSPDG TVLGPLWGTE QNPPLEFDCC DSLQRPLGDD WEYGPGEFGM
401: LDADILSSPI N
101: RRGRNGSSSV AETIAWWRER NRQLKCSVDT EKRVRRPPAK GSKKGCMRGK GGPENPNCRY RGVRQRTWGK WVAEIREPNR GSRLWLGTFP TAFQAALAYD
201: DAARAMYGTM ARLNLPAMTR GLCGSTSTSY NSEDVDASVS CDFGIKTPRV DAGSETVDAP RTWADNIKHP KIELKEDVAS DMWPSSAADA PETQSTEASV
301: DLLLCQSPRE DEFSVEEMLR MMGTDTDNGA PDQFGAVAAD TGWQCMIPAD VGLDLQSPDG TVLGPLWGTE QNPPLEFDCC DSLQRPLGDD WEYGPGEFGM
401: LDADILSSPI N
001: MPSEIVDRKR KSRGTRDVAE ILRQWREYNE QIEAESCIDG GGPKSIRKPP PKGSRKGCMK GKGGPENGIC DYRGVRQRRW GKWVAEIREP DGGARLWLGT
101: FSSSYEAALA YDEAAKAIYG QSARLNLPEI TNRSSSTAAT ATVSGSVTAF SDESEVCARE DTNASSGFGQ VKLEDCSDEY VLLDSSQCIK EELKGKEEVR
201: EEHNLAVGFG IGQDSKRETL DAWLMGNGNE QEPLEFGVDE TFDINELLGI LNDNNVSGQE TMQYQVDRHP NFSYQTQFPN SNLLGSLNPM EIAQPGVDYG
301: CPYVQPSDME NYGIDLDHRR FNDLDIQDLD FGGDKDVHGS T
101: FSSSYEAALA YDEAAKAIYG QSARLNLPEI TNRSSSTAAT ATVSGSVTAF SDESEVCARE DTNASSGFGQ VKLEDCSDEY VLLDSSQCIK EELKGKEEVR
201: EEHNLAVGFG IGQDSKRETL DAWLMGNGNE QEPLEFGVDE TFDINELLGI LNDNNVSGQE TMQYQVDRHP NFSYQTQFPN SNLLGSLNPM EIAQPGVDYG
301: CPYVQPSDME NYGIDLDHRR FNDLDIQDLD FGGDKDVHGS T
Arabidopsis Description
DREB2CIntegrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G40340]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.