Factsheet for Solyc06g050520.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061541	Potato	nucleus	83.67	78.44
Solyc10g080310.1.1	Tomato	nucleus	16.0	65.75
AT2G40350.2	Thale cress	nucleus	27.0	49.39
KRH22495	Soybean	nucleus	31.67	47.98
KRH26854	Soybean	nucleus	31.33	47.72
KRH25441	Soybean	nucleus	32.67	46.45
KRH56072	Soybean	nucleus	33.0	46.26
Solyc05g052410.1.1	Tomato	nucleus	56.0	42.11
CDX93190	Canola	nucleus	28.0	39.44
VIT_13s0067g01960.t01	Wine grape	nucleus	45.0	38.03
Solyc04g050750.1.1	Tomato	nucleus	20.33	37.89
KRH73245	Soybean	nucleus	47.67	36.48
KRH14906	Soybean	nucleus	46.33	35.37
CDY52924	Canola	nucleus	38.0	33.93
Bra017011.1-P	Field mustard	nucleus	38.0	33.93
GSMUA_Achr9P04630_001	Banana	nucleus	31.33	31.65
AT2G40340.6	Thale cress	mitochondrion, nucleus, plastid	36.67	31.61
GSMUA_Achr11P...	Banana	nucleus	28.33	30.47
GSMUA_Achr5P28050_001	Banana	nucleus	24.0	27.07
GSMUA_Achr6P32780_001	Banana	nucleus	35.67	26.03
Solyc04g080910.1.1	Tomato	nucleus	19.33	23.39
Solyc10g076370.1.1	Tomato	nucleus	29.33	21.73
Solyc10g076380.1.1	Tomato	nucleus	22.33	20.74

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	EMBL:AF500011	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ncoils:Coil
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0044212	GO:GO:0045893	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF2	UniProt:Q8GZF2	SMART:SM00380	SUPFAM:SSF54171
EnsemblPlantsGene:Solyc06g050520.1	EnsemblPlants:Solyc06g050520.1.1	UniParc:UPI00000ADCE4	SEG:seg	:	:

Description

Dehydration responsive element binding protein [Source:UniProtKB/TrEMBL;Acc:Q8GZF2]

Coordinates

chr6:-:33213525..33214427

Molecular Weight (calculated)

33303.1 Da

IEP (calculated)

4.658

GRAVY (calculated)

-0.583

Length

300 amino acids

Sequence
(BLAST)

001: MAIMDEAANM VCVPLDYSRK RKSRSRRDRT KNVEETLAKW KEYNEKLDNE GKGKPVRKVP AKGSKKGCMR GKGGPENWRC KYRGVRQRIW GKWVAEIREP
101: KRGSRLWLGT FGTAIEAALA YDDAARAMYG PCARLNLPNY ACDSVSWATT SASASASDCT VASGFGEVCP VDGALHEADT PLSSVKDEGT AMDIVEPTSI
201: DEDTLKSGWD CLDKLNMDEM FDVDELLAML DSTPVFTKDY NSDGKHNNMV SDSQCQEPNA VVDPMTVDYG FDFLKPGRQE DLNFSSDDLA FIDLDSELVV

Best Arabidopsis Sequence Match ( AT2G40340.3 )
(BLAST)

001: MPSEIVDRKR KSRGTRDVAE ILRQWREYNE QIEAESCIDG GGPKSIRKPP PKGSRKGCMK GKGGPENGIC DYRGVRQRRW GKWVAEIREP DGGARLWLGT
101: FSSSYEAALA YDEAAKAIYG QSARLNLPEI TNRSSSTAAT ATVSGSVTAF SDESEVCARE DTNASSGFGQ DSKRETLDAW LMGNGNEQEP LEFGVDETFD
201: INELLGILND NNVSGQETMQ YQVDRHPNFS YQTQFPNSNL LGSLNPMEIA QPGVDYGCPY VQPSDMENYG IDLDHRRFND LDIQDLDFGG DKDVHGST

Arabidopsis Description

DREB2CIntegrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G40340]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.