Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH22495 | Soybean | nucleus | 47.56 | 39.39 |
| KRH26854 | Soybean | nucleus | 46.95 | 39.09 |
| KRH25441 | Soybean | nucleus | 45.73 | 35.55 |
| KRH56072 | Soybean | nucleus | 45.73 | 35.05 |
| AT2G40340.6 | Thale cress | mitochondrion, nucleus, plastid | 71.95 | 33.91 |
| CDX93190 | Canola | nucleus | 40.85 | 31.46 |
| Bra017011.1-P | Field mustard | nucleus | 63.41 | 30.95 |
| CDY52924 | Canola | nucleus | 62.8 | 30.65 |
| AT1G75490.1 | Thale cress | nucleus | 34.15 | 27.18 |
| Solyc06g050520.1.1 | Tomato | nucleus | 49.39 | 27.0 |
| PGSC0003DMT400061541 | Potato | nucleus | 51.22 | 26.25 |
| AT2G38340.1 | Thale cress | nucleus | 35.98 | 24.18 |
| AT5G05410.1 | Thale cress | nucleus | 49.39 | 24.18 |
| VIT_13s0067g01960.t01 | Wine grape | nucleus | 51.22 | 23.66 |
| AT3G11020.1 | Thale cress | nucleus | 46.95 | 23.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.12 | 23.2 |
| KRH14906 | Soybean | nucleus | 53.05 | 22.14 |
| KRH73245 | Soybean | nucleus | 52.44 | 21.94 |
| Solyc05g052410.1.1 | Tomato | nucleus | 50.61 | 20.8 |
| PGSC0003DMT400069733 | Potato | nucleus | 50.61 | 20.29 |
| AT5G18450.1 | Thale cress | nucleus | 36.59 | 19.54 |
| AT3G57600.1 | Thale cress | nucleus | 31.71 | 18.77 |
| AT2G40220.1 | Thale cress | nucleus | 27.44 | 13.72 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | EntrezGene:818628 | UniProt:A0A1P8B1T1 | ProteinID:ANM62838.1 | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | ArrayExpress:AT2G40350 | EnsemblPlantsGene:AT2G40350 | RefSeq:AT2G40350 | TAIR:AT2G40350 | RefSeq:AT2G40350-TAIR-G |
| EnsemblPlants:AT2G40350.2 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR001471 | InterPro:IPR036955 | RefSeq:NP_001324965.1 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31241 | PANTHER:PTHR31241:SF17 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0000376AE3 | SEG:seg |
Description
Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G40350]
Coordinates
chr2:-:16851434..16852803
Molecular Weight (calculated)
18494.4 Da
IEP (calculated)
10.389
GRAVY (calculated)
-0.595
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSASEIVDR KRKSRGTRDV AEILRKWREY NEQTEADSCI DGGGSKPIRK APPKRSRKGC MKGKGGPENG ICDYTGVRQR TWGKWVAEIR EPGRGAKLWL
101: GTFSSSYEAA LAYDEASKAI YGQSARLNLP LLPLCQARLL HFLMNLKFVH VRIQMQDLVL VRSD
101: GTFSSSYEAA LAYDEASKAI YGQSARLNLP LLPLCQARLL HFLMNLKFVH VRIQMQDLVL VRSD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.