CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25441	Soybean	nucleus	90.65	91.94
KRH22495	Soybean	nucleus	71.5	77.27
KRH26854	Soybean	nucleus	69.63	75.63
AT2G40350.2	Thale cress	nucleus	35.05	45.73
Solyc06g050520.1.1	Tomato	nucleus	46.26	33.0
PGSC0003DMT400061541	Potato	nucleus	47.66	31.88
CDX93190	Canola	nucleus	30.84	30.99
KRH61095	Soybean	nucleus	34.58	30.2
GSMUA_Achr11P...	Banana	nucleus	38.78	29.75
KRH51773	Soybean	nucleus	34.11	29.32
VIT_13s0067g01960.t01	Wine grape	nucleus	48.13	29.01
KRH73245	Soybean	nucleus	51.87	28.32
KRH14906	Soybean	nucleus	50.47	27.48
GSMUA_Achr9P04630_001	Banana	nucleus	37.38	26.94
GSMUA_Achr5P28050_001	Banana	nucleus	32.71	26.32
Bra017011.1-P	Field mustard	nucleus	41.12	26.19
CDY52924	Canola	nucleus	41.12	26.19
Solyc05g052410.1.1	Tomato	nucleus	46.26	24.81
PGSC0003DMT400069733	Potato	nucleus	46.73	24.45
KRH05892	Soybean	nucleus	32.71	24.39
AT2G40340.6	Thale cress	mitochondrion, nucleus, plastid	39.25	24.14
KRH15125	Soybean	nucleus	31.78	24.03
KRH49463	Soybean	nucleus	38.78	23.58
KRG93713	Soybean	nucleus	28.5	22.34
KRG95297	Soybean	nucleus	29.44	22.34
KRH66977	Soybean	nucleus	29.44	22.18
GSMUA_Achr6P32780_001	Banana	nucleus	42.06	21.9
KRH16554	Soybean	nucleus	26.17	21.62
KRH33104	Soybean	nucleus	31.78	21.32
KRG93709	Soybean	nucleus	23.83	21.25
KRH71963	Soybean	nucleus	30.37	21.04
KRH14926	Soybean	nucleus	28.5	18.89
KRH73281	Soybean	nucleus, plastid	28.5	18.05
KRH00328	Soybean	nucleus	40.19	16.32

Protein Annotations

EntrezGene:100783729	MapMan:15.5.7.2	Gene3D:3.30.730.10	EMBL:ACUP02004092	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EMBL:BT095431	UniProt:C6TCY3	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_06G301300	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0044212	GO:GO:0045893	InterPro:IPR001471
InterPro:IPR036955	EnsemblPlants:KRH56072	ProteinID:KRH56072	ProteinID:KRH56072.1	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF2	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0001890BE8
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:49029819..49031998

Molecular Weight (calculated)

23285.1 Da

IEP (calculated)

8.318

GRAVY (calculated)

-0.771

Length

214 amino acids

Sequence
(BLAST)

001: MHMLVKNHNK GDGSKSLADT LAKWKEYNAW LESNNEAEKP ARKVPAKGSK KGCMKGKGGP ENSRCNYRGV RQRTWGKWVA EIREPNRGSR LWLGTFPTAI
101: SAALAYDEAA RAMYGSCARL NFPNVQVSTL SEESSRNSPA AANRSRNSPA ASQSGHALMI LESSECMILP NNSGGDAAED DDMEDLSLSL SVKRVKHEEG
201: EDESGTSSSY LSLS

Best Arabidopsis Sequence Match ( AT2G40350.2 )
(BLAST)

001: MPSASEIVDR KRKSRGTRDV AEILRKWREY NEQTEADSCI DGGGSKPIRK APPKRSRKGC MKGKGGPENG ICDYTGVRQR TWGKWVAEIR EPGRGAKLWL
101: GTFSSSYEAA LAYDEASKAI YGQSARLNLP LLPLCQARLL HFLMNLKFVH VRIQMQDLVL VRSD

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G40350]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.