CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14926	Soybean	nucleus	77.22	80.81
VIT_13s0067g01400.t01	Wine grape	nucleus	44.38	49.02
PGSC0003DMT400085168	Potato	nucleus	38.17	44.48
Bra004978.1-P	Field mustard	nucleus	39.35	41.96
GSMUA_Achr9P18060_001	Banana	nucleus	31.66	41.63
PGSC0003DMT400092312	Potato	nucleus	38.46	41.4
CDY52427	Canola	nucleus	39.35	41.18
Zm00001d038001_P001	Maize	nucleus	30.18	41.13
GSMUA_Achr3P10100_001	Banana	nucleus	34.02	40.78
AT2G40220.1	Thale cress	nucleus	38.76	39.94
GSMUA_Achr5P07400_001	Banana	nucleus	34.32	39.73
TraesCS1D01G225000.1	Wheat	plastid	29.88	39.3
KXG21759	Sorghum	nucleus	29.88	39.3
CDY54991	Canola	nucleus	39.05	39.17
TraesCS1B01G236700.1	Wheat	nucleus	29.59	39.06
TraesCS1A01G223400.1	Wheat	nucleus	29.59	38.46
Bra000178.1-P	Field mustard	nucleus	38.17	38.39
CDY07614	Canola	nucleus	38.17	38.39
Os05t0351200-00	Rice	nucleus	29.59	37.17
HORVU1Hr1G060060.1	Barley	nucleus, plastid	29.29	32.25
KRH26854	Soybean	nucleus	17.46	29.95
KRH22495	Soybean	nucleus	17.46	29.8
KRH56072	Soybean	nucleus	18.05	28.5
KRH25441	Soybean	nucleus	17.46	27.96
KRH51773	Soybean	nucleus	18.93	25.7
KRH61095	Soybean	nucleus	18.34	25.31
KRH16554	Soybean	nucleus	18.64	24.32
KRH66977	Soybean	nucleus	20.12	23.94
KRG95297	Soybean	nucleus	19.82	23.76
KRG93713	Soybean	nucleus	18.34	22.71
KRH71963	Soybean	nucleus	20.71	22.65
KRG93709	Soybean	nucleus	15.68	22.08
KRH33104	Soybean	nucleus	20.41	21.63
KRH15125	Soybean	nucleus	18.05	21.55
KRH05892	Soybean	nucleus	17.75	20.91
KRH49463	Soybean	nucleus	18.05	17.33
KRH14906	Soybean	nucleus	17.16	14.76
KRH73245	Soybean	nucleus	16.86	14.54
KRH00328	Soybean	nucleus	18.64	11.95

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:ABI4	EMBL:ACUP02001273	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_02G264700	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009738	GO:GO:0009791
GO:GO:0009987	GO:GO:0043565	GO:GO:0044212	GO:GO:0045893	GO:GO:0048316	InterPro:IPR001471
InterPro:IPR036955	UniProt:K7KAX0	EnsemblPlants:KRH73281	ProteinID:KRH73281	ProteinID:KRH73281.1	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF7	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002951B4D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:44979872..44982156

Molecular Weight (calculated)

37062.3 Da

IEP (calculated)

8.616

GRAVY (calculated)

-0.762

Length

338 amino acids

Sequence
(BLAST)

001: MASLLPQPQE TKPTATTATE TTPSETSITA SANKSSSSNN NNSSSNSRKC KGKGGPDNNK FRYRGVRQRS WGKWVAEIRE PRKRTRKWLG TFATAEDAAR
101: AYDRAAIILY GSRAQLNLQP SGSSSQSSSS RSSSSSTQTL RPLLPRPSGF TFNFPFNSAP ATTVPYPYNN SHNYTYTPPV LYPIDNSKNH NINTVQVHHP
201: HHYRCPEEVV QVPHSESDLG GLGGNNNIVV DGSIRSTSYQ RHGFLDNINN NNNHVHVQVQ HGVFSNQQQQ HQNSVVEGVN SSVVGSVSSS MDASSVDPDL
301: ALVGTMGLGS SSPFWSMANE DDYTGSLWDY NDPFFFDL

Best Arabidopsis Sequence Match ( AT2G40220.1 )
(BLAST)

001: MDPLASQHQH NHLEDNNQTL THNNPQSDST TDSSTSSAQR KRKGKGGPDN SKFRYRGVRQ RSWGKWVAEI REPRKRTRKW LGTFATAEDA ARAYDRAAVY
101: LYGSRAQLNL TPSSPSSVSS SSSSVSAASS PSTSSSSTQT LRPLLPRPAA ATVGGGANFG PYGIPFNNNI FLNGGTSMLC PSYGFFPQQQ QQQNQMVQMG
201: QFQHQQYQNL HSNTNNNKIS DIELTDVPVT NSTSFHHEVA LGQEQGGSGC NNNSSMEDLN SLAGSVGSSL SITHPPPLVD PVCSMGLDPG YMVGDGSSTI
301: WPFGGEEEYS HNWGSIWDFI DPILGEFY

Arabidopsis Description

ABI4Ethylene-responsive transcription factor ABI4 [Source:UniProtKB/Swiss-Prot;Acc:A0MES8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.