Factsheet for HORVU1Hr1G060060.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G225000.1	Wheat	plastid	78.18	93.39
TraesCS1B01G236700.1	Wheat	nucleus	77.2	92.58
TraesCS1A01G223400.1	Wheat	nucleus	77.2	91.15
KXG21759	Sorghum	nucleus	50.49	60.31
Zm00001d038001_P001	Maize	nucleus	47.88	59.27
Os05t0351200-00	Rice	nucleus	48.21	55.02
GSMUA_Achr3P10100_001	Banana	nucleus	34.53	37.59
GSMUA_Achr9P18060_001	Banana	nucleus	31.27	37.35
GSMUA_Achr5P07400_001	Banana	nucleus	35.18	36.99
VIT_13s0067g01400.t01	Wine grape	nucleus	33.55	33.66
PGSC0003DMT400085168	Potato	nucleus	28.66	30.34
AT2G40220.1	Thale cress	nucleus	31.92	29.88
CDY52427	Canola	nucleus	31.27	29.72
KRH73281	Soybean	nucleus, plastid	32.25	29.29
Bra004978.1-P	Field mustard	nucleus	29.97	29.02
HORVU2Hr1G111510.1	Barley	nucleus	17.92	28.5
KRH14926	Soybean	nucleus	29.64	28.17
Bra000178.1-P	Field mustard	nucleus	30.62	27.98
CDY07614	Canola	nucleus	30.62	27.98
CDY54991	Canola	nucleus	30.62	27.89
PGSC0003DMT400092312	Potato	nucleus	28.34	27.71
HORVU1Hr1G063100.1	Barley	nucleus	19.22	23.79
HORVU6Hr1G050520.2	Barley	nucleus	15.31	19.83
HORVU6Hr1G050500.2	Barley	nucleus	16.94	17.33
HORVU1Hr1G070410.1	Barley	nucleus	18.24	14.47
HORVU1Hr1G060490.5	Barley	plasma membrane	18.24	12.39

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	UniProt:A0A287FUD2	InterPro:ABI4	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009738	GO:GO:0009791	GO:GO:0009987
GO:GO:0048316	EnsemblPlantsGene:HORVU1Hr1G060060	EnsemblPlants:HORVU1Hr1G060060.1	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF7	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI000B473BA2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:436681200..436682486

Molecular Weight (calculated)

32980.6 Da

IEP (calculated)

9.973

GRAVY (calculated)

-0.551

Length

307 amino acids

Sequence
(BLAST)

001: PPHPHPSLSL FIGLPNAQRA RHPSLFPIPL RPPAHASARS LPLSLYLHHC RHPMEHKPNP AVLTTTTTEA TSSSEVGSSG GRKGKAAGKG GPENAKFRYR
101: GVRQRSWGKW VAEIREPRKR SRKWLGTFAT AEDAARAYDR AALLLYGPRA HLNLTAPPPL APGADSHPRP LGSSASSSSS SAPPPLRPLL PRPPQHSGGG
201: GAVFQHHHQH QYRFLPLRVT PPSTSTPLYY ASTATASTVT TTVAPPHETT SSLPVASSST VDAHDGAPAG AAEAEVTPEW YLAAEEEDYE AALLWNEPDT
301: LFDIFPK

Best Arabidopsis Sequence Match ( AT2G40220.1 )
(BLAST)

001: MDPLASQHQH NHLEDNNQTL THNNPQSDST TDSSTSSAQR KRKGKGGPDN SKFRYRGVRQ RSWGKWVAEI REPRKRTRKW LGTFATAEDA ARAYDRAAVY
101: LYGSRAQLNL TPSSPSSVSS SSSSVSAASS PSTSSSSTQT LRPLLPRPAA ATVGGGANFG PYGIPFNNNI FLNGGTSMLC PSYGFFPQQQ QQQNQMVQMG
201: QFQHQQYQNL HSNTNNNKIS DIELTDVPVT NSTSFHHEVA LGQEQGGSGC NNNSSMEDLN SLAGSVGSSL SITHPPPLVD PVCSMGLDPG YMVGDGSSTI
301: WPFGGEEEYS HNWGSIWDFI DPILGEFY

Arabidopsis Description

ABI4Ethylene-responsive transcription factor ABI4 [Source:UniProtKB/Swiss-Prot;Acc:A0MES8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.