Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G050520.2 | Barley | nucleus | 79.0 | 100.0 |
| TraesCS1B01G235100.2 | Wheat | nucleus | 67.67 | 52.32 |
| HORVU1Hr1G060490.5 | Barley | plasma membrane | 78.67 | 52.21 |
| TraesCS1D01G223600.2 | Wheat | nucleus | 67.0 | 51.41 |
| TraesCS1A01G221900.1 | Wheat | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 66.67 | 49.14 |
| KXG21735 | Sorghum | nucleus | 47.33 | 42.26 |
| Zm00001d010048_P004 | Maize | nucleus | 47.67 | 38.96 |
| HORVU2Hr1G111510.1 | Barley | nucleus | 22.0 | 34.2 |
| CDY36289 | Canola | nucleus | 32.0 | 32.99 |
| Bra034159.1-P | Field mustard | nucleus | 31.67 | 32.76 |
| CDY67039 | Canola | nucleus | 31.67 | 32.53 |
| CDY08557 | Canola | nucleus | 31.67 | 30.25 |
| Bra029889.1-P | Field mustard | nucleus | 31.67 | 30.25 |
| CDY00987 | Canola | nucleus | 31.0 | 29.9 |
| HORVU1Hr1G063100.1 | Barley | nucleus | 24.67 | 29.84 |
| Bra028759.1-P | Field mustard | nucleus | 29.0 | 28.52 |
| Bra009112.1-P | Field mustard | nucleus | 30.67 | 27.88 |
| CDX70151 | Canola | nucleus | 30.67 | 27.88 |
| CDX98843 | Canola | nucleus | 31.0 | 27.84 |
| CDY52149 | Canola | nucleus | 30.33 | 27.74 |
| CDY04950 | Canola | nucleus | 29.67 | 27.47 |
| AT3G11020.1 | Thale cress | nucleus | 30.0 | 27.27 |
| AT5G05410.1 | Thale cress | nucleus | 30.33 | 27.16 |
| Bra005852.1-P | Field mustard | nucleus | 29.67 | 27.13 |
| CDX73896 | Canola | nucleus | 29.67 | 23.3 |
| Bra001386.1-P | Field mustard | nucleus | 29.33 | 22.92 |
| HORVU1Hr1G060060.1 | Barley | nucleus, plastid | 17.33 | 16.94 |
| HORVU1Hr1G070410.1 | Barley | nucleus | 18.67 | 14.47 |
| CDY00719 | Canola | nucleus | 3.67 | 4.64 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | ProteinID:AEI54698.1 | ProteinID:AGL07768.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| InterPro:DNA-bd_dom_sf | UniProt:F8SLU2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:HORVU6Hr1G050500 | EnsemblPlants:HORVU6Hr1G050500.2 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 |
| PFscan:PS51032 | PANTHER:PTHR31241 | PANTHER:PTHR31241:SF16 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0002143650 |
| SEG:seg | : | : | : | : | : |
Description
AP2/EREBP protein [Source:UniProtKB/TrEMBL;Acc:F8SLU2]
Coordinates
chrchr6H:+:306844697..306846267
Molecular Weight (calculated)
32615.1 Da
IEP (calculated)
10.068
GRAVY (calculated)
-0.813
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGLQRSSST FRRKKRPRRS RDGPNSVSET IKQWKEVKQQ LEHDPQGAKR ARKPPAKGSK KGCMQGKGGP ENTQCGFRGV RQRTWGKWVA EIRESNRVSR
101: LWLGTFPTAE VAAQAYDEAA KAMYGPLART NFPVQDAQAA PTVVVQVATE GVVRGSSASC ESTTTSNHSD VASSSHNKQL QIQAPEISSQ SDLLESTQSV
201: EYIQQQSVPD AVSSIAMSTS EEDVYEPLEP ISNLPDGEAH CAISRCFGPR TWPETWTRRR RGCPAASSTP SSGVPAPALA PQRAEAVPSP RGGNGRRCRG
101: LWLGTFPTAE VAAQAYDEAA KAMYGPLART NFPVQDAQAA PTVVVQVATE GVVRGSSASC ESTTTSNHSD VASSSHNKQL QIQAPEISSQ SDLLESTQSV
201: EYIQQQSVPD AVSSIAMSTS EEDVYEPLEP ISNLPDGEAH CAISRCFGPR TWPETWTRRR RGCPAASSTP SSGVPAPALA PQRAEAVPSP RGGNGRRCRG
001: MAVYDQSGDR NRTQIDTSRK RKSRSRGDGT TVAERLKRWK EYNETVEEVS TKKRKVPAKG SKKGCMKGKG GPENSRCSFR GVRQRIWGKW VAEIREPNRG
101: SRLWLGTFPT AQEAASAYDE AAKAMYGPLA RLNFPRSDAS EVTSTSSQSE VCTVETPGCV HVKTEDPDCE SKPFSGGVEP MYCLENGAEE MKRGVKADKH
201: WLSEFEHNYW SDILKEKEKQ KEQGIVETCQ QQQQDSLSVA DYGWPNDVDQ SHLDSSDMFD VDELLRDLNG DDVFAGLNQD RYPGNSVANG SYRPESQQSG
301: FDPLQSLNYG IPPFQLEGKD GNGFFDDLSY LDLEN
101: SRLWLGTFPT AQEAASAYDE AAKAMYGPLA RLNFPRSDAS EVTSTSSQSE VCTVETPGCV HVKTEDPDCE SKPFSGGVEP MYCLENGAEE MKRGVKADKH
201: WLSEFEHNYW SDILKEKEKQ KEQGIVETCQ QQQQDSLSVA DYGWPNDVDQ SHLDSSDMFD VDELLRDLNG DDVFAGLNQD RYPGNSVANG SYRPESQQSG
301: FDPLQSLNYG IPPFQLEGKD GNGFFDDLSY LDLEN
Arabidopsis Description
DREB2ADehydration-responsive element-binding protein 2A [Source:UniProtKB/Swiss-Prot;Acc:O82132]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.