Factsheet for HORVU5Hr1G094160.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G060490.5
HORVU2Hr1G048520.1
HORVU2Hr1G069400.8
HORVU2Hr1G072420.11
HORVU5Hr1G057510.3
HORVU6Hr1G050500.2
HORVU6Hr1G050520.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06770.1	HORVU1Hr1G060490.5	AT5G05410.1	18552202
AT1G06770.1	HORVU6Hr1G050500.2	AT5G05410.1	18552202
AT1G06770.1	HORVU6Hr1G050520.2	AT5G05410.1	18552202
AT2G30580.1	HORVU2Hr1G048520.1	AT1G30860.1	21798944
AT2G30580.1	HORVU5Hr1G057510.3	AT2G46550.1	21798944
AT2G30580.1	HORVU2Hr1G072420.11	AT3G09980.1	21798944
AT2G30580.1	HORVU1Hr1G060490.5	AT5G05410.1	18552202
AT2G30580.1	HORVU6Hr1G050500.2	AT5G05410.1	18552202
AT2G30580.1	HORVU6Hr1G050520.2	AT5G05410.1	18552202
AT2G30580.1	HORVU2Hr1G069400.8	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G391100.1	Wheat	mitochondrion	55.3	65.33
TraesCS5A01G381800.1	Wheat	mitochondrion	54.85	64.8
TraesCS5B01G385300.1	Wheat	mitochondrion	55.3	61.25
Os03t0741700-00	Rice	cytosol	21.44	49.48
Bra022807.1-P	Field mustard	cytosol	5.64	35.71
AT2G30580.1	Thale cress	nucleus	32.51	34.29
KRG95629	Soybean	nucleus	32.51	33.64
KXG37592	Sorghum	mitochondrion, nucleus	35.67	32.38
KRH67309	Soybean	nucleus	32.05	31.91
CDY47131	Canola	nucleus	30.02	31.89
CDX97807	Canola	nucleus	29.57	31.49
VIT_07s0141g00610.t01	Wine grape	nucleus	30.47	31.4
CDY10748	Canola	nucleus	29.8	31.35
KRH32110	Soybean	nucleus	30.02	31.0
CDY29659	Canola	nucleus	29.35	30.88
KRH71326	Soybean	mitochondrion, nucleus	30.02	30.86
Bra018304.1-P	Field mustard	nucleus	29.57	30.32
Solyc06g084040.2.1	Tomato	nucleus	28.89	29.7
Zm00001d013303_P001	Maize	nucleus	25.96	29.56
PGSC0003DMT400038984	Potato	nucleus	28.67	29.53
HORVU5Hr1G106470.4	Barley	nucleus	28.22	29.48
Solyc09g065990.2.1	Tomato	nucleus	28.44	29.3
KRH34095	Soybean	nucleus	28.44	29.17
CDY23989	Canola	nucleus	28.22	29.14
KRG92687	Soybean	nucleus	28.44	29.1
AT1G06770.1	Thale cress	nucleus	27.54	28.98
Solyc06g008600.2.1	Tomato	nucleus	27.31	28.95
PGSC0003DMT400051660	Potato	nucleus	28.44	27.88
HORVU5Hr1G014430.6	Barley	nucleus	29.57	27.64
Bra021651.1-P	Field mustard	nucleus	21.67	27.27
VIT_14s0081g00070.t01	Wine grape	nucleus	27.54	27.17
Bra015526.1-P	Field mustard	nucleus	14.9	26.94
VIT_05s0020g04730.t01	Wine grape	nucleus	28.44	26.58
HORVU5Hr1G093720.3	Barley	nucleus	30.47	25.91
KRG92425	Soybean	nucleus	23.7	24.65
CDY06664	Canola	nucleus	20.77	24.02
KRH34379	Soybean	nucleus	23.48	23.85
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	7.9	23.33
Bra015525.1-P	Field mustard	cytosol	21.44	22.67
PGSC0003DMT400013629	Potato	nucleus	14.67	22.18
CDY61240	Canola	nucleus	8.8	21.67
PGSC0003DMT400087291	Potato	nucleus	14.22	20.26
CDX94870	Canola	nucleus	19.41	19.15
Bra001901.1-P	Field mustard	nucleus	19.86	19.01
AT3G23060.1	Thale cress	nucleus	20.54	18.96
CDX92974	Canola	cytosol	19.64	18.79
PGSC0003DMT400087288	Potato	plastid	7.0	18.67
Solyc09g083300.1.1	Tomato	nucleus, plastid	10.84	17.98
PGSC0003DMT400010761	Potato	nucleus	18.51	16.6
Solyc09g083310.1.1	Tomato	nucleus	14.45	16.0
PGSC0003DMT400015657	Potato	nucleus, plastid	12.64	14.18

Protein Annotations

EnsemblPlants:HORVU5Hr1G094160.2	EnsemblPlantsGene:HORVU5Hr1G094160	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR10825	PANTHER:PTHR10825:SF42	PFAM:PF13923	PFscan:PS50089
ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000B475D0B	UniProt:A0A287SB71
MapMan:12.3.5.1.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:594300360..594305834

Molecular Weight (calculated)

49362.5 Da

IEP (calculated)

9.833

GRAVY (calculated)

-0.613

Length

443 amino acids

Sequence
(BLAST)

001: RSSLLPAGQC PRFHRPAPRI PDSPPPPAPR VPPTRRSPRR RRSRWRRCPR AAAAERWGTR VPAGGGGEMG YAPGLARVPR ALLAPCVTCP LCRGYFREAS
101: AFSECGHTFC RECIMKKIDE EEIEACPVCD VALGITPEEK LRADISIQAI RNNLFPPKVE VDAVEAPTIT LPAKRKERSI SSLVEIPKVA TQSTLTGRRT
201: KAARRTIISH KFSLGKLPNK SEDRNQTVEK ALELKSTKMT TSANKKQNSV DISEDGKNHE TIDKEELEKP LQSLVVASAK KSQKSSSCHE ESHKNKTTTE
301: DGPRESPEAD PHDSITTQVW FSLVTSPNQV EAKLLPQLEK NFYRIKDGTM RVSSILRLIM KKLELASDDK VEILCHDKPV CPSTTLHGLL KRWLSCKAKD
401: EVQRPVGAPA NEFVMELRYR RCPAPRPLCC TMKTSSLPCH CST

Best Arabidopsis Sequence Match ( AT1G06770.1 )
(BLAST)

001: MMIKVKKETM RACLSCSICD NILRDATTIS ECLHTFCRKC IYEKITEDEI ETCPVCNIDL GSTPLEKLRP DHNLQDLRAK IFALKRRKVK APGIVSLPGK
101: RKERSISSLV VSTPMVSAQA GTTRRRTKAP TRKELRNGSL AERTVKKEES SGDELLESTS SPDTLNKFTQ NKRQSKKSCK ESISNKENKD GDEPWDSKMD
201: WKPLNFLVEV ANGTKPLKSS ASQGSGSKSE HANVSRNQFQ GSKTKTKNKK RKCKREDDKS NNGDPTTSET VTPKRMRTTQ RKRSATTLGD SRNLPQPDES
301: SAKQERRNGP VWFSLVASND QEGGTSLPQI PANFLRIRDG NTTVSFIQKY LMRKLDLESE NEIEIKCMGE AVIPTLTLYN LVDLWLQKSS NHQRFAALVG
401: SSAKDFTMVL VYARKLPECN M

Arabidopsis Description

DRIP1E3 ubiquitin protein ligase DRIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.