Factsheet for VIT_14s0081g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0141g00610.t01	Wine grape	nucleus	60.58	63.26
KRG92687	Soybean	nucleus	55.46	57.51
KRH34095	Soybean	nucleus	55.23	57.41
GSMUA_Achr9P10710_001	Banana	nucleus	45.88	51.76
Os03t0741700-00	Rice	cytosol	22.05	51.56
GSMUA_Achr5P03230_001	Banana	nucleus	45.88	46.82
VIT_05s0020g04730.t01	Wine grape	nucleus	49.22	46.62
GSMUA_Achr4P17750_001	Banana	nucleus	40.31	46.53
Os12t0600200-03	Rice	cytosol, nucleus	30.96	40.41
Os03t0632800-01	Rice	nucleus	37.86	39.35
TraesCS5A01G378600.1	Wheat	nucleus	43.65	38.58
TraesCS5B01G382100.1	Wheat	nucleus	44.1	38.37
TraesCS5D01G388500.1	Wheat	nucleus	44.32	38.27
KXG37982	Sorghum	nucleus	43.88	38.18
HORVU5Hr1G093720.3	Barley	nucleus	44.1	38.0
Zm00001d033322_P001	Maize	nucleus	44.1	37.64
TraesCS5D01G069800.1	Wheat	nucleus	38.98	37.08
HORVU5Hr1G014430.6	Barley	nucleus	38.98	36.92
TraesCS5A01G058000.1	Wheat	nucleus	38.75	36.86
Zm00001d030985_P001	Maize	nucleus	38.75	36.55
TraesCS5B01G065600.1	Wheat	cytosol	38.31	36.44
Zm00001d041405_P001	Maize	nucleus	39.42	36.42
Zm00001d013303_P001	Maize	nucleus	29.18	33.68
TraesCS5D01G391100.1	Wheat	mitochondrion	27.62	33.07
TraesCS5A01G381800.1	Wheat	mitochondrion	27.39	32.8
KXG37592	Sorghum	mitochondrion, nucleus	35.41	32.58
OQU79520	Sorghum	nucleus	38.98	31.7
Zm00001d033967_P001	Maize	nucleus	26.5	31.15
TraesCS5B01G385300.1	Wheat	mitochondrion	27.62	31.0
HORVU5Hr1G094160.2	Barley	plastid	27.17	27.54

Protein Annotations

EntrezGene:100241529	wikigene:100241529	MapMan:12.3.5.1.1.1	Gene3D:3.30.40.10	EMBL:AM425487	ProteinID:CAN82106
ProteinID:CAN82106.1	ProteinID:CCB58728	ProteinID:CCB58728.1	UniProt:F6HVL5	EMBL:FN596256	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0016272	GO:GO:0051082	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100241529
wikigene:LOC100241529	PFAM:PF13923	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR10825	PANTHER:PTHR10825:SF42
SMART:SM00184	SUPFAM:SSF57850	TIGR:TC69964	UniParc:UPI0001984B3D	ArrayExpress:VIT_14s0081g00070	EnsemblPlantsGene:VIT_14s0081g00070
EnsemblPlants:VIT_14s0081g00070.t01	unigene:Vvi.14464	RefSeq:XP_002264002	RefSeq:XP_002264002.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr14:+:7617829..7629338

Molecular Weight (calculated)

49538.9 Da

IEP (calculated)

10.036

GRAVY (calculated)

-0.471

Length

449 amino acids

Sequence
(BLAST)

001: MTSQVVKVRR ETIAACMTCP LCNKLLKEAT TISLCLHTFC RKCIYEKLSD EEVDCCPVCN IDLGCVPVDK LRPDHNLQDI RAKIFPFKRR KTSVPEVMPP
101: IPLPVKRKER SLSSLVVSTP RVSMQTGLTG RRTKAVARKS TALRGSSFSI VEPIKKEEDS VEDCPESSSS PESRNKVAQT KKQNSSISEA SKDQKPNKDT
201: ENDADPWDGK VDLWTPLNCL VEAANRTKSS KFNSQGTSLA KSEPFNAPDS EVYMPKTKAK AEPLNAADGE VCIPKTKIKE HGHKIKVQDD KNGAALLPGP
301: VKRRRMRAVG RKRISASGEM CTPAQVVLSA AGAKRGRRNC PIWFSLVASE NQGGNGPLSK IPAYYLRVKD GNLPVSFIQK YLVKKLDLTN EAEVEIRCQG
401: EAVVPTLQLQ KLVELWLRTA STSKRVATSV GTSAKEFVMV LTYTRVQAP

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.