CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99396
EES01602
EES06901
EES11990
EES12098
EES13800
KXG21735
KXG30263
KXG35486

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06770.1	KXG21735	AT5G05410.1	18552202
AT2G30580.1	EER99396	AT1G30860.1	21798944
AT2G30580.1	EES13800	AT2G46550.1	21798944
AT2G30580.1	KXG35486	AT2G46550.1	21798944
AT2G30580.1	EES06901	AT3G09980.1	21798944
AT2G30580.1	EES12098	AT3G09980.1	21798944
AT2G30580.1	KXG21735	AT5G05410.1	18552202
AT2G30580.1	EES11990	AT5G22310.1	21798944
AT2G30580.1	KXG30263	AT5G22310.1	21798944
AT3G23060.1	EES01602	AT5G45490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033322_P001	Maize	nucleus	76.74	75.29
TraesCS5A01G378600.1	Wheat	nucleus	55.81	56.69
HORVU5Hr1G093720.3	Barley	nucleus	56.4	55.85
TraesCS5B01G382100.1	Wheat	nucleus	54.65	54.65
TraesCS5D01G388500.1	Wheat	nucleus	54.26	53.85
Os03t0632800-01	Rice	nucleus	44.96	53.7
GSMUA_Achr9P10710_001	Banana	nucleus	41.09	53.27
VIT_07s0141g00610.t01	Wine grape	nucleus	39.34	47.21
GSMUA_Achr4P17750_001	Banana	nucleus	35.08	46.53
KRG95629	Soybean	nucleus	38.18	46.03
KRG92687	Soybean	nucleus	38.18	45.5
Solyc09g065990.2.1	Tomato	nucleus	37.79	45.35
AT2G30580.1	Thale cress	nucleus	36.63	45.0
PGSC0003DMT400038984	Potato	nucleus	37.4	44.88
KRH34095	Soybean	nucleus	37.21	44.44
KRH67309	Soybean	nucleus	38.18	44.27
CDY29659	Canola	nucleus	35.85	43.94
VIT_14s0081g00070.t01	Wine grape	nucleus	38.18	43.88
GSMUA_Achr5P03230_001	Banana	nucleus	37.21	43.64
CDX97807	Canola	nucleus	35.08	43.51
CDY47131	Canola	nucleus	35.08	43.41
OQU79520	Sorghum	nucleus	45.93	42.93
Solyc06g084040.2.1	Tomato	nucleus	35.85	42.92
Bra022807.1-P	Field mustard	cytosol	5.81	42.86
CDY10748	Canola	nucleus	34.5	42.28
KRH32110	Soybean	nucleus	35.08	42.19
Solyc06g008600.2.1	Tomato	nucleus	33.72	41.63
AT1G06770.1	Thale cress	nucleus	33.91	41.57
KRH71326	Soybean	mitochondrion, nucleus	34.69	41.53
Bra018304.1-P	Field mustard	nucleus	34.69	41.44
KXG37357	Sorghum	nucleus	30.23	40.21
PGSC0003DMT400051660	Potato	nucleus	35.08	40.04
CDY23989	Canola	nucleus	32.75	39.39
Bra021651.1-P	Field mustard	nucleus	26.74	39.2
VIT_05s0020g04730.t01	Wine grape	nucleus	34.5	37.55
PGSC0003DMT400013629	Potato	nucleus	20.35	35.84
Bra015526.1-P	Field mustard	nucleus	15.89	33.47
CDY06664	Canola	nucleus	24.81	33.42
KXG37592	Sorghum	mitochondrion, nucleus	28.88	30.53
Bra015525.1-P	Field mustard	cytosol	24.22	29.83
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	8.53	29.33
CDY61240	Canola	nucleus	9.88	28.33
KRH34379	Soybean	nucleus	23.84	28.21
KRG92425	Soybean	nucleus	23.06	27.93
PGSC0003DMT400087291	Potato	nucleus	15.31	25.4
CDX94870	Canola	nucleus	20.16	23.16
Bra001901.1-P	Field mustard	nucleus	20.35	22.68
AT3G23060.1	Thale cress	nucleus	20.93	22.5
CDX92974	Canola	cytosol	19.77	22.03
Solyc09g083300.1.1	Tomato	nucleus, plastid	11.24	21.72
PGSC0003DMT400010761	Potato	nucleus	20.54	21.46
Solyc09g083310.1.1	Tomato	nucleus	16.47	21.25
PGSC0003DMT400015657	Potato	nucleus, plastid	15.7	20.51
PGSC0003DMT400087288	Potato	plastid	6.2	19.28
KXG34542	Sorghum	nucleus, plastid	16.28	15.73

Protein Annotations

EnsemblPlants:KXG37982	EnsemblPlantsGene:SORBI_3001G161900	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR10825	PANTHER:PTHR10825:SF47	PFAM:PF13923	PFscan:PS50089
ProteinID:KXG37982	ProteinID:KXG37982.1	ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI00081AB8A0	UniProt:A0A1B6QJ86	MapMan:12.3.5.1.1.1	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:13337365..13342959

Molecular Weight (calculated)

56006.4 Da

IEP (calculated)

10.068

GRAVY (calculated)

-0.705

Length

516 amino acids

Sequence
(BLAST)

001: MQPGPTSPPP GPDKSEAPAP LPDADARADD DVVKAAARGE DHGERRAATT ASARGRKRRR RGGGGGPSSY FSTSSSSSRS PSAAAAGTRG VVMVKRDLLA
101: RCMTCPLCRR LLRDATTISE CLHTFCRKCI YQKFDDEEVE CCPVCKIDLG CTPTEKLRAD HSLQDVRSKL FPFKRKKINA EEVPSSISLP TKIKERSISS
201: LVVDAPKVKP TGLTGRRTRA VARKAAAAAA AATLRELGPI IEDPVKKEID SCDSHSQNSN LPANSSKAPQ TRRQIPPNAE ASNHSSNKDT EGDSKDDLAD
301: KSELWRPLNC LVEAANRTKS FRSSSQSPVV KGEHINGSTS GTFASKAKAR ENLEKSKTED DKKDAPTPPV LPKRRAQGTA RKRKDLQAPT DVKPDAAAAQ
401: SAKKFRSIWF SLIASFNQQG DPPLPQIPSH YLRIKDGNVP ASSIQKYLMQ KLSLPSESEV EIKCCEQPVN PSQPLCNLVE LWLKGRETQT TQTMTGSSAK
501: EFVMVLTYGR PKAPAM

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.