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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
EES05532
EES06901
EES12098
KXG19644
OQU91730

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G36410.1 EES06901 AT3G09980.1 21798944
AT2G36410.1 EES12098 AT3G09980.1 21798944
AT3G09980.1 EES05532 AT3G01180.1 21798944
AT3G09980.1 KXG19644 AT3G01180.1 21798944
AT3G09980.1 OQU91730 AT3G01180.1 21798944
AT3G09980.1 EES06901 AT3G09980.1 21798944
AT3G09980.1 EES12098 AT3G09980.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d016683_P001 Maize nucleus 72.78 78.44
CDY69705 Canola cytosol 10.0 75.0
Os02t0528100-01 Rice cytosol 70.56 72.99
EES12098 Sorghum nucleus 62.22 66.27
KRG96151 Soybean nucleus 55.56 59.88
GSMUA_Achr8P16080_001 Banana nucleus 57.78 59.43
KRH67862 Soybean nucleus 55.0 59.28
GSMUA_Achr3P18940_001 Banana nucleus 52.22 59.12
Bra017239.1-P Field mustard cytosol 41.67 57.69
VIT_08s0007g03770.t01 Wine grape nucleus 52.78 57.23
CDY27436 Canola cytosol 32.78 56.73
VIT_06s0061g01440.t01 Wine grape nucleus 53.89 56.4
GSMUA_Achr2P20290_001 Banana nucleus 52.78 54.91
KRH25180 Soybean plastid 53.33 54.55
PGSC0003DMT400068276 Potato nucleus 51.67 53.76
KRH30497 Soybean plastid 52.22 53.71
Solyc09g009210.2.1 Tomato nucleus 49.44 53.61
Bra028542.1-P Field mustard nucleus 46.67 53.16
PGSC0003DMT400007017 Potato nucleus 48.89 53.01
PGSC0003DMT400072397 Potato cytosol, extracellular, nucleus, plastid 50.0 52.94
Bra012002.1-P Field mustard nucleus 47.78 52.76
Solyc10g083520.1.1 Tomato plastid 49.44 52.35
CDY13331 Canola nucleus 46.67 51.85
Solyc11g066970.1.1 Tomato nucleus 49.44 51.74
AT3G09980.1 Thale cress nucleus, plastid 51.11 51.69
CDX67549 Canola nucleus 45.56 51.57
KRG92044 Soybean nucleus 48.33 51.48
CDY60156 Canola cytosol, plastid 50.56 51.12
Bra029810.1-P Field mustard cytosol, plastid 50.56 51.12
CDY04510 Canola cytosol, nucleus, plastid 47.78 50.89
CDX71428 Canola cytosol 47.78 50.89
KRH34738 Soybean cytosol 48.33 50.58
CDY66899 Canola nucleus 48.33 50.58
CDY30533 Canola cytosol, mitochondrion, nucleus, plastid 48.89 50.57
Bra034365.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 48.89 50.57
CDX78133 Canola nucleus 45.56 49.7
Bra006959.1-P Field mustard nucleus 45.56 49.7
Bra001292.1-P Field mustard nucleus 49.44 49.44
CDX74002 Canola nucleus 48.89 48.89
CDY00898 Canola cytosol, plastid 48.33 48.88
AT2G27740.1 Thale cress nucleus 47.22 48.85
CDX73594 Canola nucleus 45.0 48.8
CDX67543 Canola cytosol, plastid 44.44 48.48
Bra028539.1-P Field mustard cytosol, plastid 44.44 48.48
CDY13335 Canola cytosol 43.89 47.88
AT3G52900.1 Thale cress cytosol 43.33 47.56
CDY17934 Canola cytosol 39.44 47.33
CDY10366 Canola nucleus 45.0 46.82
AT5G03660.1 Thale cress nucleus 45.0 46.82
CDX70295 Canola nucleus 45.0 46.82
AT2G36355.1 Thale cress cytosol, extracellular, nucleus 40.0 46.45
AT3G52920.1 Thale cress nucleus 46.11 46.11
CDX84559 Canola cytosol, nucleus, plastid 44.44 45.45
Bra023067.1-P Field mustard cytosol, nucleus, plastid 44.44 45.45
CDY43719 Canola plastid 47.78 45.03
Bra017238.1-P Field mustard plastid 47.22 44.74
CDY43720 Canola nucleus 43.33 44.57
CDY57618 Canola cytosol, mitochondrion, nucleus 43.33 44.32
CDX79677 Canola cytosol, mitochondrion, nucleus 43.33 44.32
CDY32440 Canola cytosol 38.33 44.23
CDY25859 Canola cytosol 38.33 44.23
PGSC0003DMT400050208 Potato cytosol 40.0 44.17
VIT_13s0074g00640.t01 Wine grape cytosol 47.22 44.04
CDY70153 Canola nucleus, plastid 42.78 44.0
AT2G36410.1 Thale cress nucleus, plastid 47.22 43.59
Solyc11g007330.1.1 Tomato nucleus 39.44 43.29
CDX79678 Canola cytosol 35.0 41.18
Bra009520.1-P Field mustard cytosol, nucleus, peroxisome 40.56 36.14
Bra023068.1-P Field mustard nucleus 47.22 29.62
Bra013746.1-P Field mustard nucleus, plastid 13.33 27.27
CDY71050 Canola cytosol 32.78 20.27
Bra027585.1-P Field mustard plastid 33.33 13.02
Protein Annotations
EnsemblPlants:EES06901EnsemblPlantsGene:SORBI_3004G163600EntrezGene:8059620InterPro:GORABPANTHER:PTHR21470PANTHER:PTHR21470:SF6
PFAM:PF04949ProteinID:EES06901ProteinID:EES06901.1ProteinID:OQU85048.1RefSeq:XP_002453925.1SEG:seg
UniParc:UPI0001A85BB3UniProt:C5XTD3MapMan:35.2:::
Description
hypothetical protein
Coordinates
chr4:-:51289826..51291575
Molecular Weight (calculated)
20900.2 Da
IEP (calculated)
7.149
GRAVY (calculated)
-0.824
Length
180 amino acids
Sequence
(BLAST)
001: MQQGDQQMME CSGGKEQQMQ IVCVRSSSTG GEEVVGEWAA AEEQSSSRSS ALSLFKEKEE EIERKKVEVR DKVFSMLGRV EEETKRLAFI RQELELMADP
101: TRREVDAIRK RIDKVNKHLK PLAKTCLKKE KEYKMCLEAY NEKSSEKATL VNRLMELVSE SERLRMKKLE ELNKTIESLY
Best Arabidopsis Sequence Match ( AT2G36410.2 )
(BLAST)
001: MTQSQTNDGA GAGAVTTVES VPPQPQSQPQ PQPQQQSNEM VLHTGSLSFS SHMSREDEEM TRSALSAFRA KEDEIEKRRM EVRERIQAQL GRVEQETKRL
101: STIREELESM ADPMRKEVSV VRKKIDSVNK ELKPLGSTVQ KKEREYKEAL DTFNEKNREK VQLITKLMEL VGESEKLRMI KLEELSKSIE TV
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJR4]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.